Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_P15
(349 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY223816-1|AAP41104.1| 1427|Homo sapiens Cohen syndrome 1 protei... 31 0.99
AY223815-1|AAP41103.1| 3997|Homo sapiens Cohen syndrome 1 protei... 31 0.99
AY223814-1|AAP41102.1| 4022|Homo sapiens Cohen syndrome 1 protei... 31 0.99
AK091431-1|BAC03664.1| 992|Homo sapiens protein ( Homo sapiens ... 31 0.99
AJ608773-1|CAE75585.1| 3997|Homo sapiens VPS13B-2A protein protein. 31 0.99
AJ608772-1|CAE75584.1| 4022|Homo sapiens VPS13B-1A protein protein. 31 0.99
BC010420-1|AAH10420.1| 578|Homo sapiens arginyl-tRNA synthetase... 28 9.3
AL451126-2|CAI10899.1| 578|Homo sapiens arginyl-tRNA synthetase... 28 9.3
AL049697-5|CAI20376.1| 578|Homo sapiens arginyl-tRNA synthetase... 28 9.3
AK093661-1|BAC04214.1| 360|Homo sapiens protein ( Homo sapiens ... 28 9.3
AK023550-1|BAB14608.1| 578|Homo sapiens protein ( Homo sapiens ... 28 9.3
>AY223816-1|AAP41104.1| 1427|Homo sapiens Cohen syndrome 1 protein
splice variant 2 protein.
Length = 1427
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 177 SPSKLSIYTKEPDRLTCSLEQDPVGTDSGGSLKEDIRSISSDEFLAMERSAELDGPS 347
SP + SI T PD TCS D T G S++ S SD + ++ + G S
Sbjct: 1263 SPVRSSIGTAPPDTSTCSPSADIGTTTEGDSIQAGEESPFSDSVTLEQTTSNIGGTS 1319
>AY223815-1|AAP41103.1| 3997|Homo sapiens Cohen syndrome 1 protein
splice variant 1 protein.
Length = 3997
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 177 SPSKLSIYTKEPDRLTCSLEQDPVGTDSGGSLKEDIRSISSDEFLAMERSAELDGPS 347
SP + SI T PD TCS D T G S++ S SD + ++ + G S
Sbjct: 1263 SPVRSSIGTAPPDTSTCSPSADIGTTTEGDSIQAGEESPFSDSVTLEQTTSNIGGTS 1319
>AY223814-1|AAP41102.1| 4022|Homo sapiens Cohen syndrome 1 protein
protein.
Length = 4022
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 177 SPSKLSIYTKEPDRLTCSLEQDPVGTDSGGSLKEDIRSISSDEFLAMERSAELDGPS 347
SP + SI T PD TCS D T G S++ S SD + ++ + G S
Sbjct: 1263 SPVRSSIGTAPPDTSTCSPSADIGTTTEGDSIQAGEESPFSDSVTLEQTTSNIGGTS 1319
>AK091431-1|BAC03664.1| 992|Homo sapiens protein ( Homo sapiens
cDNA FLJ34112 fis, clone FCBBF3008870. ).
Length = 992
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 177 SPSKLSIYTKEPDRLTCSLEQDPVGTDSGGSLKEDIRSISSDEFLAMERSAELDGPS 347
SP + SI T PD TCS D T G S++ S SD + ++ + G S
Sbjct: 733 SPVRSSIGTAPPDTSTCSPSADIGTTTEGDSIQAGEESPFSDSVTLEQTTSNIGGTS 789
>AJ608773-1|CAE75585.1| 3997|Homo sapiens VPS13B-2A protein protein.
Length = 3997
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 177 SPSKLSIYTKEPDRLTCSLEQDPVGTDSGGSLKEDIRSISSDEFLAMERSAELDGPS 347
SP + SI T PD TCS D T G S++ S SD + ++ + G S
Sbjct: 1263 SPVRSSIGTAPPDTSTCSPSADIGTTTEGDSIQAGEESPFSDSVTLEQTTSNIGGTS 1319
>AJ608772-1|CAE75584.1| 4022|Homo sapiens VPS13B-1A protein protein.
Length = 4022
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 177 SPSKLSIYTKEPDRLTCSLEQDPVGTDSGGSLKEDIRSISSDEFLAMERSAELDGPS 347
SP + SI T PD TCS D T G S++ S SD + ++ + G S
Sbjct: 1263 SPVRSSIGTAPPDTSTCSPSADIGTTTEGDSIQAGEESPFSDSVTLEQTTSNIGGTS 1319
>BC010420-1|AAH10420.1| 578|Homo sapiens arginyl-tRNA synthetase 2,
mitochondrial (putative) protein.
Length = 578
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 14 KLSSEKRFHSL*RYCETGSEESEKKRCYF*REQFYENLQRESQ*RLSL*QFKQDISVET- 190
KL S H Y + E ++ K ++F++ L+ LSL Q +D+S+E
Sbjct: 193 KLQSNPLQHLFEVYVQVNKEAADDKSVAKAAQEFFQRLELGDVQALSLWQKFRDLSIEEY 252
Query: 191 VYLYQRTG 214
+ +Y+R G
Sbjct: 253 IRVYKRLG 260
>AL451126-2|CAI10899.1| 578|Homo sapiens arginyl-tRNA synthetase 2,
mitochondrial (putative) protein.
Length = 578
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 14 KLSSEKRFHSL*RYCETGSEESEKKRCYF*REQFYENLQRESQ*RLSL*QFKQDISVET- 190
KL S H Y + E ++ K ++F++ L+ LSL Q +D+S+E
Sbjct: 193 KLQSNPLQHLFEVYVQVNKEAADDKSVAKAAQEFFQRLELGDVQALSLWQKFRDLSIEEY 252
Query: 191 VYLYQRTG 214
+ +Y+R G
Sbjct: 253 IRVYKRLG 260
>AL049697-5|CAI20376.1| 578|Homo sapiens arginyl-tRNA synthetase 2,
mitochondrial (putative) protein.
Length = 578
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 14 KLSSEKRFHSL*RYCETGSEESEKKRCYF*REQFYENLQRESQ*RLSL*QFKQDISVET- 190
KL S H Y + E ++ K ++F++ L+ LSL Q +D+S+E
Sbjct: 193 KLQSNPLQHLFEVYVQVNKEAADDKSVAKAAQEFFQRLELGDVQALSLWQKFRDLSIEEY 252
Query: 191 VYLYQRTG 214
+ +Y+R G
Sbjct: 253 IRVYKRLG 260
>AK093661-1|BAC04214.1| 360|Homo sapiens protein ( Homo sapiens
cDNA FLJ36342 fis, clone THYMU2006666, highly similar to
Homo sapiens putative ATP-dependent RNA helicase ROK1
mRNA. ).
Length = 360
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 177 SPSKLSIYTKEPDRLTCSLEQDPVGTD 257
S K I P+RL SL+QDP G D
Sbjct: 174 SSKKFDILVTTPNRLIYSLKQDPPGID 200
>AK023550-1|BAB14608.1| 578|Homo sapiens protein ( Homo sapiens
cDNA FLJ13488 fis, clone PLACE1003915, weakly similar to
PROBABLE ARGINYL-TRNA SYNTHETASE, CYTOPLASMIC (EC
6.1.1.19). ).
Length = 578
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 14 KLSSEKRFHSL*RYCETGSEESEKKRCYF*REQFYENLQRESQ*RLSL*QFKQDISVET- 190
KL S H Y + E ++ K ++F++ L+ LSL Q +D+S+E
Sbjct: 193 KLQSNPLQHLFEVYVQVNKEAADDKSVAKAAQEFFQRLELGDVQALSLWQKFRDLSIEEY 252
Query: 191 VYLYQRTG 214
+ +Y+R G
Sbjct: 253 IRVYKRLG 260
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,456,246
Number of Sequences: 237096
Number of extensions: 987207
Number of successful extensions: 1895
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1895
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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