Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P15
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    26   6.4  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical
           protein B0280.2 protein.
          Length = 627

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 307 NSSLEIDLMSSFKLPPESVPTGSCSNEHVNLSGSLV*IDSFDGD-ILFKLL 158
           N  +E+   SS K   + +P   CS  H+N  GS   I S D D +L +LL
Sbjct: 542 NPLIEMVDQSSSKSETQ-IPVTECSQSHLNGKGSAAQIQSADFDKVLNQLL 591


>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical
           protein F35G12.8 protein.
          Length = 1549

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 168 NRISPSKLSIYTKEPDRLTCSLEQDPVGTDSGGSLKEDIRS--ISSDEFLAMERSA 329
           NR+ P  + ++ +  +RLTC L Q  +  D   + K  + +   ++ EFL  E  A
Sbjct: 267 NRLEPF-VKLFQRRVNRLTCDLSQQRIARDHARNSKVAMENPVRAAIEFLMKENEA 321


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 337 SNSADRSIARNSSLEIDLMSSFK--LPPESVPTGSCSNEHV 221
           SN +  SI + S   I   SSF   LPP S+P     + HV
Sbjct: 270 SNLSHNSIPQTSPKRISQSSSFSFSLPPSSLPLSPKIDNHV 310


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical protein
            C31C9.6 protein.
          Length = 965

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 307  NSSLEIDLMSSFKLPPESVPTGSCSNEHVNLSGSLV*IDSFDGD 176
            N  +E+   SS K   + +P   CS  H+N  GS   I S D D
Sbjct: 880  NPLIEMVDQSSSKSETQ-IPVTECSQNHLNGKGSAAQIQSADFD 922


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,941,313
Number of Sequences: 27780
Number of extensions: 156660
Number of successful extensions: 353
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)