Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P14
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...    94   9e-21
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...    94   9e-21
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   2.8  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   2.8  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   3.7  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   4.8  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   4.8  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   4.8  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   4.8  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    25   6.4  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    24   8.5  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 93.9 bits (223), Expect = 9e-21
 Identities = 50/100 (50%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
 Frame = +3

Query: 123 KISFLVFLEAVEEVQKDYW*NCIHQEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDL 302
           K  +  FL+ + +V+K         EI E  P+K K FGIW+RY+SRSG HNMY+E+RD 
Sbjct: 37  KSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDT 96

Query: 303 SVGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRR 419
           +  GAV   Y DM ARHRAR  SI+I+K VEV K    RR
Sbjct: 97  TRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRR 136



 Score = 88.6 bits (210), Expect = 3e-19
 Identities = 36/63 (57%), Positives = 51/63 (80%)
 Frame = +1

Query: 22  LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIRK 201
           LKEY+V+GRK+P+E EP P L++MR+F+P+  VAKSR+WYFL+ + K KK TGEIV+I +
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 202 FQK 210
             +
Sbjct: 63  ISE 65


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 93.9 bits (223), Expect = 9e-21
 Identities = 50/100 (50%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
 Frame = +3

Query: 123 KISFLVFLEAVEEVQKDYW*NCIHQEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDL 302
           K  +  FL+ + +V+K         EI E  P+K K FGIW+RY+SRSG HNMY+E+RD 
Sbjct: 37  KSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDT 96

Query: 303 SVGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRR 419
           +  GAV   Y DM ARHRAR  SI+I+K VEV K    RR
Sbjct: 97  TRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRR 136



 Score = 88.6 bits (210), Expect = 3e-19
 Identities = 36/63 (57%), Positives = 51/63 (80%)
 Frame = +1

Query: 22  LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIRK 201
           LKEY+V+GRK+P+E EP P L++MR+F+P+  VAKSR+WYFL+ + K KK TGEIV+I +
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 202 FQK 210
             +
Sbjct: 63  ISE 65


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 25  KEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWY 141
           +E  V+   +  E     P   +R +SP+ ++  S FWY
Sbjct: 470 QEILVLKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWY 508


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 305 TQVTVFTVHIVDTRARLVTQPDTKVLNLNRTLFWNFLMDTISPVVF 168
           T  T  +VHI+DTR +L       V ++N   + N ++D  SP  F
Sbjct: 155 TGSTSRSVHIIDTRQQL-----DSVSSVNTQYYSNIVVDPFSPNYF 195


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 109 DPIVAKSRFWYFLRQLKKFK 168
           D ++   RFWY+L + K F+
Sbjct: 476 DRLIVTFRFWYYLMKAKSFQ 495


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 198 PDGYNFTSSLFELLQLPQEIPETRFCHNRIR 106
           PDG  +T + F  L+LP++ P      NR R
Sbjct: 331 PDGSYYTMANFSKLKLPKDYPFPEEIANRPR 361


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +1

Query: 76  PPLYKMRIFSPDPIVAKSRFWYFL 147
           PP     +  P  +  K +FWY++
Sbjct: 534 PPKSNAELVDPSTLSGKDKFWYYI 557


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 116 IGSGEKILILYRGGFGSLSEGSLRPMTSYSFNSPFAP 6
           +GS    L++  G FG+ SEG      S   N+  +P
Sbjct: 806 VGSNNINLLMPNGQFGTRSEGGKNASASRYLNTALSP 842


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 248 QPDTKVLNLNRTLFWNFLMDTISPVVFLNFFNCLKKYQK 132
           + D K+L+L + L   +   TI+P+V      CL++YQK
Sbjct: 64  EEDEKLLHLAKLLPTQWR--TIAPIVGRTATQCLERYQK 100


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 167 LNFFNCLKKYQKRDF 123
           +N   C+KKY  RDF
Sbjct: 111 INLIECMKKYNVRDF 125


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 160 KFKKTTGEIVSIRKFQKRVLLRLRTLVSGCVTSLAL 267
           K + T G++ S+ KF+KRV      L +G  T   L
Sbjct: 432 KIESTVGKLPSLPKFKKRVDSSKMNLSAGSKTKSKL 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,556
Number of Sequences: 5004
Number of extensions: 31708
Number of successful extensions: 81
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)