Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_P14
(423 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 101 2e-22
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 100 4e-22
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 98 2e-21
06_01_0637 + 4635136-4635969 30 0.88
09_04_0108 + 14657020-14657193,14659040-14659355,14659728-146598... 28 2.7
04_01_0014 - 231228-233179,233522-233714 27 4.7
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 27 6.2
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 27 6.2
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 27 6.2
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 101 bits (242), Expect = 2e-22
Identities = 48/99 (48%), Positives = 63/99 (63%)
Frame = +3
Query: 123 KISFLVFLEAVEEVQKDYW*NCIHQEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDL 302
K F FL +++V+K EI EK+P IKN+GIWLRY+SR+G HNMY+EYRD
Sbjct: 40 KSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDT 99
Query: 303 SVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRR 419
++ GAV Q Y +M +RHR R IQIIK + C+R
Sbjct: 100 TLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKR 138
Score = 70.9 bits (166), Expect = 4e-13
Identities = 28/62 (45%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Frame = +1
Query: 28 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIRK-F 204
+Y+V+GR LP+ ++ P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I++I + F
Sbjct: 8 QYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIF 67
Query: 205 QK 210
+K
Sbjct: 68 EK 69
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 100 bits (240), Expect = 4e-22
Identities = 47/99 (47%), Positives = 63/99 (63%)
Frame = +3
Query: 123 KISFLVFLEAVEEVQKDYW*NCIHQEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDL 302
K F FL +++V+K EI E++P IKN+GIWLRY+SR+G HNMY+EYRD
Sbjct: 40 KSKFWYFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDT 99
Query: 303 SVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRR 419
++ GAV Q Y +M +RHR R IQIIK + C+R
Sbjct: 100 TLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKR 138
Score = 70.1 bits (164), Expect = 7e-13
Identities = 26/62 (41%), Positives = 48/62 (77%)
Frame = +1
Query: 28 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIRKFQ 207
+Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G++++I +
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
Query: 208 KR 213
+R
Sbjct: 68 ER 69
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 98.3 bits (234), Expect = 2e-21
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = +3
Query: 141 FLEAVEEVQKDYW*NCIHQEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAV 320
FL +++V+K EI E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV
Sbjct: 63 FLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAV 122
Query: 321 TQCYRDMGARHRARAHSIQIIKVEVIKAAACRR 419
Q Y +M +RHR R IQIIK + C+R
Sbjct: 123 EQMYTEMASRHRVRFPCIQIIKTATVHFKLCKR 155
Score = 49.2 bits (112), Expect = 1e-06
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 17/79 (21%)
Frame = +1
Query: 28 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFLRQL 156
+Y+V+GR LP+ + P +Y+M++++ + + AKS+F W YFLR+L
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFLRKL 67
Query: 157 KKFKKTTGEIVSIRKFQKR 213
KK KK+ G++++I + +R
Sbjct: 68 KKVKKSNGQMLAINEIFER 86
>06_01_0637 + 4635136-4635969
Length = 277
Score = 29.9 bits (64), Expect = 0.88
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 107 GEKILILYRGGFGSLSEGSLRPMTSYSFNSPFAP 6
G IL LY G F + +G P+T YS P AP
Sbjct: 202 GLTILELYTGSFPLVEQGQSIPLTCYSDGPPEAP 235
>09_04_0108 +
14657020-14657193,14659040-14659355,14659728-14659887,
14661265-14661725,14663778-14663856,14664732-14664882,
14665414-14665467,14665724-14665888
Length = 519
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +1
Query: 4 RGAKGELKEYEVIGRKLPSESEPKP 78
RGAKG K EV G LP E P P
Sbjct: 331 RGAKGVTKFVEVPGALLPQEEFPSP 355
>04_01_0014 - 231228-233179,233522-233714
Length = 714
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -2
Query: 143 KYQKRDFATIGSGEKILILYRGGFGSLSEGSLRPMT 36
+Y D AT EK L GGFGS+ +G LR +T
Sbjct: 407 RYSDLDHATKNFSEK---LGEGGFGSVFKGVLRDLT 439
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 148 RQLKKFKKTTGEIVSIRKFQKRVLLRLRTLV 240
R+LKK K+ E+V +R+ K +L R L+
Sbjct: 235 RKLKKLKELEVEVVELRRKNKELLYEKRDLI 265
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 148 RQLKKFKKTTGEIVSIRKFQKRVLLRLRTLV 240
R+LKK K+ E+V +R+ K +L R L+
Sbjct: 540 RKLKKLKELEVEVVELRRKNKELLYEKRDLI 570
>06_03_0912 +
25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 69 AKASSIQNEDFLS*SYCGKISFLVFLEAVEEVQKD-YW*NCIH 194
+++ +Q FL+ S+C ++ L FLE E Q D Y N +H
Sbjct: 613 SQSGGLQKLSFLNVSHCSQLVKLSFLEEKLEKQPDHYLPNMVH 655
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,801,621
Number of Sequences: 37544
Number of extensions: 205760
Number of successful extensions: 635
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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