Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P13
         (254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    31   0.024
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   1.2  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   3.7  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    24   3.7  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    23   4.9  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    23   4.9  
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    23   4.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    23   4.9  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    23   6.4  
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    23   6.4  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    23   8.5  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    23   8.5  
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch...    23   8.5  

>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 31.1 bits (67), Expect = 0.024
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 148 EEFKQFYTKWLLKRSPVRVGATISEISP 231
           EE+K  +T W + +SP+ +G  +S +SP
Sbjct: 279 EEYKTHFTMWAILKSPLILGNDVSSMSP 306


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 152 SSNNSIQNGCSKDHLSESERRYRKSVQRF 238
           S NN++ N  SKD  S S    R+ ++ F
Sbjct: 237 SMNNNVNNNKSKDIWSSSNTEEREQIREF 265


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 149 KSSNNSIQNGCSKDHLSESERRYRKSVQRFKHQ 247
           + +NNS Q   +KD+  ++ +R +K   + K Q
Sbjct: 35  EQNNNSSQASVTKDNKKKAAKRAKKKAAKKKKQ 67


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 130 ISLGAQEEFKQFYTKWLLKRSPVRVGATISEISPTIQ 240
           + LG     K  + KW+ K S +++      I+P  Q
Sbjct: 379 VLLGENGTGKTTFCKWMAKNSDLKISMKPQTIAPKFQ 415


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 155 SNNSIQNGCSKDHLSESERRYRKSVQRFKH 244
           +N +I     K     + + YRKSV+R KH
Sbjct: 64  NNENIITTTPKHQTVITPKSYRKSVKRIKH 93


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 164 SIQNGCSKDHLSESERRYRK 223
           SIQNGCS   +++ + R RK
Sbjct: 164 SIQNGCSLLRITKKKVRQRK 183


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 156 QTILYKMVAQKITCPSRSDDIGNQSNDSNTKR 251
           +TIL  ++   +    RS +I  QS+ S TKR
Sbjct: 176 ETILMNLLRGDVARLPRSTEITTQSDSSPTKR 207


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 99  NYLAGCLKS*DFIRSSRRVQTILYKMVAQKITCPSRSDDIGNQSNDSNTKRY 254
           +YL  CL         R V+T L+K+V+        S D    ++ +  KR+
Sbjct: 384 SYLISCLHIPSTTPRERNVETSLHKVVSSLDLSEEISPDRATPTSFTERKRF 435


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 92  SGQLLGWLPKELRFH*ELKKSSNNS 166
           S   + W P+   FH + KKSS N+
Sbjct: 348 SRSYIDWNPEGFMFHSKTKKSSFNT 372


>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 128

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 99 CPDSRPITKKKSC 61
          C  SRP+TK++SC
Sbjct: 39 CYVSRPLTKERSC 51


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 157 KQFYTKWLLKRSPVRVGATISE 222
           K FY K++  R+PV + +++ E
Sbjct: 30  KDFYDKFIATRTPVIIKSSLPE 51


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 24 HSPELAVNYQYTNK 65
          H P+  V+Y+YTN+
Sbjct: 26 HYPDAQVSYKYTNR 39


>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 182 SKDHLSESERRYRKSVQRFKHQ 247
           +K HL+E E R  + V+RF+ +
Sbjct: 61  NKTHLNEEEIRTNERVKRFQRR 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 925,374
Number of Sequences: 5004
Number of extensions: 13997
Number of successful extensions: 38
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)