Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P13
         (254 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0050 + 27332855-27333009,27333725-27333790,27333971-273340...    27   2.8  
04_01_0256 + 3402982-3402984,3403077-3403158,3403307-3403449,340...    26   4.8  
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668...    25   6.4  
11_01_0431 + 3308001-3308124,3308209-3308366,3311285-3311794           25   8.4  
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805...    25   8.4  

>05_07_0050 +
           27332855-27333009,27333725-27333790,27333971-27334030,
           27334425-27334515,27334893-27335073,27336037-27336128,
           27336672-27336995
          Length = 322

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 6   RRLHRHHSPELAVNYQYTNKIFFLL*AYCRDN 101
           R+  +H  P+L V   +T+K F L   YCR N
Sbjct: 130 RQFMKHLYPDLGVGNIFTSKGFTLEIKYCRRN 161


>04_01_0256 +
           3402982-3402984,3403077-3403158,3403307-3403449,
           3403557-3403832,3404136-3404315
          Length = 227

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 143 LKKSSNNSIQNGCSKDHLSESERRYRKSVQRFKHQK 250
           LKK +++        D + E   RY+K ++R K QK
Sbjct: 62  LKKMASSVKIESVIPDDVKEEIERYKKDLERMKRQK 97


>01_05_0501 +
           22764978-22765896,22766087-22766349,22766613-22766836,
           22767419-22767749,22767968-22768372
          Length = 713

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 122 ELRFH*ELKKSSNNSIQN 175
           E +FH +L+K SNN+ QN
Sbjct: 613 ESKFHTQLEKHSNNATQN 630


>11_01_0431 + 3308001-3308124,3308209-3308366,3311285-3311794
          Length = 263

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 62  QDFFFVIGLLSGQLLGWLP--KELRFH*ELKKSSNNSIQNGCSKDHLSESER 211
           Q  F+++    G   G+LP  + +R+H  LK+  NN +QN     +L  S R
Sbjct: 41  QGKFYLVDAGYGAKQGFLPPFRAVRYH--LKEWENNPVQNEKELFNLRHSSR 90


>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
            8057595-8058314,8058404-8058603,8058988-8059172,
            8059287-8059354,8059432-8060246,8060502-8060599,
            8060702-8060887,8061358-8061538,8061651-8061812,
            8061894-8061937,8062059-8062115,8062409-8062505,
            8062614-8062786,8062868-8063081,8063270-8063395,
            8064072-8064188,8064459-8064566,8064729-8064898,
            8065049-8065127,8065211-8065285,8065845-8065942,
            8066030-8066137,8066238-8066295,8066527-8066631,
            8067461-8069516,8069804-8070697,8070896-8071852,
            8072022-8072075,8072157-8072222,8072294-8073472,
            8073868-8075598,8075764-8075829,8076763-8077788,
            8077893-8078041
          Length = 4264

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 130  ISLGAQEEFKQFYTKWLLKRSPVRVGATISEISPTIQTPKD 252
            I+  A +E     T+ + + S V +GA+ ++I+P  +  KD
Sbjct: 2737 INTDASDESISVSTQSVKEASTVEIGASTNDIAPACELRKD 2777


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,710,337
Number of Sequences: 37544
Number of extensions: 79049
Number of successful extensions: 199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)