Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P13
         (254 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-5|AAN63436.1|  486|Caenorhabditis elegans Hypothetical pr...    26   4.3  
U21324-4|AAN63435.1|  537|Caenorhabditis elegans Hypothetical pr...    26   4.3  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    25   7.4  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    25   7.4  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    25   7.4  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>U21324-5|AAN63436.1|  486|Caenorhabditis elegans Hypothetical
           protein C35D10.7b protein.
          Length = 486

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 146 KKSSNNSIQNGCSKDHLSESERRYRKSVQRFKHQK 250
           + +S+N + +   +++   S RR RKSV+   H++
Sbjct: 45  RPTSDNEVSSSSDRNNDEPSVRRKRKSVENMCHER 79


>U21324-4|AAN63435.1|  537|Caenorhabditis elegans Hypothetical
           protein C35D10.7a protein.
          Length = 537

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 146 KKSSNNSIQNGCSKDHLSESERRYRKSVQRFKHQK 250
           + +S+N + +   +++   S RR RKSV+   H++
Sbjct: 96  RPTSDNEVSSSSDRNNDEPSVRRKRKSVENMCHER 130


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 79   YRPTVGTITWLAA*RVKISLGAQEEFKQFY 168
            + P +GT+ + A   + I +G+  +FK+ +
Sbjct: 4729 FLPKIGTLIYSATTEITIDIGSYGDFKELF 4758


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 79   YRPTVGTITWLAA*RVKISLGAQEEFKQFY 168
            + P +GT+ + A   + I +G+  +FK+ +
Sbjct: 4774 FLPKIGTLIYSATTEITIDIGSYGDFKELF 4803


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 79   YRPTVGTITWLAA*RVKISLGAQEEFKQFY 168
            + P +GT+ + A   + I +G+  +FK+ +
Sbjct: 4774 FLPKIGTLIYSATTEITIDIGSYGDFKELF 4803


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 140 ELKKSSNNSIQNGCSKDHLSESERRYRKSVQRFKHQK 250
           E+KK   N   +  S D  +E ERR +K+ +  K  K
Sbjct: 538 EMKKRRPNDTDSDVSVDSEAEEERRRKKAKKEKKAAK 574


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,073,830
Number of Sequences: 27780
Number of extensions: 75495
Number of successful extensions: 211
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)