Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_P12
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.13
04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655... 29 2.2
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 28 3.8
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381... 28 3.8
06_03_1045 - 27111771-27112097,27112205-27112330,27112434-271126... 27 5.0
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 27 6.6
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 27 6.6
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 27 8.7
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.13
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 3/111 (2%)
Frame = +1
Query: 34 PSQPSIKGTPDDRVPH--HQDSTDTTRRMISSERMX-XXXXXXXXHQRNISSDSLIQSEV 204
PS SI G P D PH S+D R S R H+++ S D
Sbjct: 356 PSDDSIYGKPSD-TPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRDYSHSKHE 414
Query: 205 NSTHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESH 357
S+H + + S+ RH + T + ++ H+ E H
Sbjct: 415 RSSHTEHRRDRKESSASDKHRHREIKDKTSKYSSNMESERESHKYMREEKH 465
>04_04_1079 -
30663919-30665044,30665143-30665298,30665405-30665563,
30665640-30665770,30666230-30666315,30666607-30666673,
30666944-30667023,30667173-30667260,30667380-30667428,
30667516-30667608,30667725-30667808,30667986-30668044,
30668293-30668327,30668416-30668718,30669111-30669275,
30669701-30669780,30670932-30671003,30671143-30671234,
30671359-30671433,30671552-30671688,30671763-30671890,
30671942-30672033,30672473-30672808
Length = 1230
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 190 IQSEVNSTHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVD 309
+Q+ V+ H S G+THR D+ N+ ++ + S L D
Sbjct: 628 VQAFVDIVHSSNGTTHRAADDDNDLKNVKNGGSFSMNLND 667
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 27.9 bits (59), Expect = 3.8
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Frame = +1
Query: 34 PSQPSIKGTPDDRVPHHQDSTDT-TRRMISSERMXXXXXXXXXHQRNISSDSLIQSEVNS 210
PS + + P H D T T RR +SER H S + +
Sbjct: 486 PSTAERRPVVREIAPKHADVTLTPARRPSTSERRPVTRETALRHSNFTGSCWPLTPQ--- 542
Query: 211 THDSRGSTHRHTDNSNNQRH 270
H SRGS H D S RH
Sbjct: 543 RHISRGSAQIHADVSTTPRH 562
>03_05_0124 +
21034963-21035181,21035618-21037466,21037485-21038194,
21038426-21038470,21038557-21038745
Length = 1003
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -3
Query: 157 CLSYLLKMSFVQKISFVV*YQCY-LDDVVHD 68
CL+ L++ + VQKI F + C+ + D+VHD
Sbjct: 436 CLNDLMQRTMVQKILFDGGHDCFTMHDLVHD 466
>06_03_1045 -
27111771-27112097,27112205-27112330,27112434-27112673,
27113343-27113429,27113520-27113652,27113711-27113820,
27114308-27114424,27114526-27114610,27114693-27114796,
27115530-27115612,27115729-27115819
Length = 500
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 175 SSDSLIQSEVNSTHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETT 345
S+ ++I +VN T D R + + L Q ++LVD AV Q+H T
Sbjct: 342 SASNVIPGQVNFTVDIRAMDDKVRETIVTSFSRLVLQRCDDRLVDCAVEQKHAAAAT 398
>08_02_0499 -
17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 214 HDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQ-ETTSESH 357
H G T + + + +H L + QN++ H + Q + T+ESH
Sbjct: 641 HHEVGDTAQECIDMTDSQHNLDKSGMQNQVSAHGTHESCEQNDQTTESH 689
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 358 CGFQMLFLGDVAETLHD 308
CG M+ +GD AE +HD
Sbjct: 473 CGVMMVVIGDAAELMHD 489
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 26.6 bits (56), Expect = 8.7
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 6/115 (5%)
Frame = +1
Query: 31 HPSQPSIKGT-PDDRVPHHQDSTDTTRRMISSERMXXXXXXXXXHQRNISSDSLIQ-SEV 204
H P I G P DR+ H + + R+ S R IS ++ S
Sbjct: 257 HERSPGILGRFPHDRLRHDRSPS----RLEPSPRDRGRHYDNRDRSPYISPRHRMRPSHY 312
Query: 205 NSTHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQET----TSESH 357
SRG H H DN+ ++ + ++S D + S++ + T+ESH
Sbjct: 313 RDNTPSRGEMHHHRDNTPSRVDSSPRRSQHEDFRDRSPSRRDKSPSERGRTTESH 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.305 0.117 0.324
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,571,738
Number of Sequences: 37544
Number of extensions: 185510
Number of successful extensions: 422
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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