Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P12
         (438 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p...    32   0.16 
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p...    32   0.16 
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact...    32   0.16 
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    31   0.37 
Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical pr...    31   0.48 
Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical pr...    31   0.48 
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    30   0.85 
U80443-6|AAK68201.1|  643|Caenorhabditis elegans Ferm domain (pr...    29   1.5  
U80443-5|AAD32269.1|  635|Caenorhabditis elegans Ferm domain (pr...    29   1.5  
U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    27   6.0  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    27   6.0  
Z68301-4|CAA92623.2|  536|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
           protein 10, isoform b protein.
          Length = 1371

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 22/113 (19%), Positives = 44/113 (38%)
 Frame = +1

Query: 25  SPHPSQPSIKGTPDDRVPHHQDSTDTTRRMISSERMXXXXXXXXXHQRNISSDSLIQSEV 204
           +PH +Q  ++        H Q++    ++   S+           +Q    S +   ++ 
Sbjct: 220 NPHQNQNHVQNNHQGANNHQQNNRRAMQQQPMSQNQANQINQMNQNQNQQQSHNQNMTQ- 278

Query: 205 NSTHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQ 363
           N  + +     + T++S   + T  QQ +Q +    A  Q H+Q    E H Q
Sbjct: 279 NQRNQTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQHGQQEQHHQ 331


>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
           protein 10, isoform a protein.
          Length = 1563

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 22/113 (19%), Positives = 44/113 (38%)
 Frame = +1

Query: 25  SPHPSQPSIKGTPDDRVPHHQDSTDTTRRMISSERMXXXXXXXXXHQRNISSDSLIQSEV 204
           +PH +Q  ++        H Q++    ++   S+           +Q    S +   ++ 
Sbjct: 220 NPHQNQNHVQNNHQGANNHQQNNRRAMQQQPMSQNQANQINQMNQNQNQQQSHNQNMTQ- 278

Query: 205 NSTHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQ 363
           N  + +     + T++S   + T  QQ +Q +    A  Q H+Q    E H Q
Sbjct: 279 NQRNQTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQHGQQEQHHQ 331


>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
           molecule UNC-10 protein.
          Length = 1563

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 22/113 (19%), Positives = 44/113 (38%)
 Frame = +1

Query: 25  SPHPSQPSIKGTPDDRVPHHQDSTDTTRRMISSERMXXXXXXXXXHQRNISSDSLIQSEV 204
           +PH +Q  ++        H Q++    ++   S+           +Q    S +   ++ 
Sbjct: 220 NPHQNQNHVQNNHQGANNHQQNNRRAMQQQPMSQNQANQINQMNQNQNQQQSHNQNMTQ- 278

Query: 205 NSTHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSESHIQ 363
           N  + +     + T++S   + T  QQ +Q +    A  Q H+Q    E H Q
Sbjct: 279 NQRNQTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQHGQQEQHHQ 331


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
 Frame = +1

Query: 7   GDRGI-TSPHPSQPSIKGTPDDRVPHHQDSTD-TTRRMISSERMXXXXXXXXXHQRNISS 180
           GD+   T+   S  SIK  P DR+    +S D ++ +  +S R          HQ    S
Sbjct: 584 GDQSTNTTIKTSTVSIKNQPTDRISPSDNSGDPSSSKKYTSRRTSTDAESTTNHQNPSES 643

Query: 181 DSLIQSEVNSTHDSRGSTHRHTDNSNNQRHTLSQQSTQN 297
                S V+ST  ++ S    T+ S    +T +  ST++
Sbjct: 644 TLAASSGVSSTTVTQSSI--PTEKSTTVDYTATTVSTKS 680


>Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 163 QRNISSDSLIQSEVNSTHDSRGSTHRHTDNSNNQRHTLSQQ 285
           Q NI+S    + +    HD   +THR      N  HT   Q
Sbjct: 276 QDNINSPKYSKKQAVKAHDRHSATHREIHGKQNMAHTTQNQ 316


>Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 163 QRNISSDSLIQSEVNSTHDSRGSTHRHTDNSNNQRHTLSQQ 285
           Q NI+S    + +    HD   +THR      N  HT   Q
Sbjct: 276 QDNINSPKYSKKQAVKAHDRHSATHREIHGKQNMAHTTQNQ 316


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 15/88 (17%), Positives = 34/88 (38%)
 Frame = +1

Query: 175 SSDSLIQSEVNSTHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSES 354
           SS S  +SE    H  + +  +H   + +   + S  S+ +        + HH++  ++ 
Sbjct: 223 SSSSSSESEDEKHHHKKHAVKKHHKKAESSSSSSSSSSSSSSSSSSEDEKHHHKKHAAKK 282

Query: 355 HIQXXXXXXXXXXXXXSDNVNSRITQHS 438
           H++             S + +S  +  S
Sbjct: 283 HVKHHKKAASSSSSSSSSSSSSSSSSSS 310


>U80443-6|AAK68201.1|  643|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 4,
           isoform b protein.
          Length = 643

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 199 EVNSTHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVS 321
           +V + HD+  S+    DNS  Q + LS+ +  N  ++  VS
Sbjct: 456 KVTTVHDNTASSSSSPDNSETQNNNLSKITNLNLSIEREVS 496


>U80443-5|AAD32269.1|  635|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 4,
           isoform a protein.
          Length = 635

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 199 EVNSTHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVS 321
           +V + HD+  S+    DNS  Q + LS+ +  N  ++  VS
Sbjct: 448 KVTTVHDNTASSSSSPDNSETQNNNLSKITNLNLSIEREVS 488


>U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical
           protein C23F12.2 protein.
          Length = 941

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +1

Query: 193 QSEVNSTHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQETTSES 354
           ++EV+ +H S      H       +H      T++    H   QQHHQ   ++S
Sbjct: 525 ETEVDISHKSFAQRRLHIIKQLEAQHVNHIAQTKSHHQQHTQQQQHHQTVPTQS 578


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
           protein ZK1067.2 protein.
          Length = 2219

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
 Frame = +1

Query: 217 DSRGSTHRHTDNSNNQRH-----TLSQQSTQNKLVDHAVSQQHHQETTS-ESHI 360
           D+ G  HR  D    QRH          S Q++  D    Q  + E+TS E+H+
Sbjct: 367 DNFGEVHRRLDEQQQQRHEDESSRYRDDSRQSRRADDRRDQYQYNESTSMENHL 420


>U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical
           protein D2092.5 protein.
          Length = 908

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +1

Query: 163 QRNISSDSLIQSEVNSTHDSRGSTHRHTDNSNNQRHTLSQQSTQNKLVDHAVSQQHHQET 342
           ++N  +DS+  S      ++  ST R  +N+N+Q+    +QS       H+  Q +HQ++
Sbjct: 438 KKNGRTDSMT-STTKGRANTMPSTTRSQNNNNSQKQ--QKQSNGKSHHQHSSHQNNHQKS 494

Query: 343 TSESH 357
              S+
Sbjct: 495 NGNSN 499


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 10   DRGITSPH-PSQPSIKGTPDDRVPHHQ 87
            D GIT  H PSQ  +    DD V H Q
Sbjct: 5035 DDGITDQHVPSQSPVPSEEDDHVTHEQ 5061


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 10   DRGITSPH-PSQPSIKGTPDDRVPHHQ 87
            D GIT  H PSQ  +    DD V H Q
Sbjct: 5035 DDGITDQHVPSQSPVPSEEDDHVTHEQ 5061


>Z68301-4|CAA92623.2|  536|Caenorhabditis elegans Hypothetical
           protein W01B6.5 protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 22  TSPHPSQPSIKGTPDDRVPHHQDSTDTTRRMISS 123
           T P P  P+ KGTP +R    +   +T+ + + S
Sbjct: 38  TKPSPISPAFKGTPKERPNCGKTKNETSGKKLRS 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.305    0.117    0.324 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,500,152
Number of Sequences: 27780
Number of extensions: 178119
Number of successful extensions: 598
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)