Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_P11
(268 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 2.4
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 24 3.1
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 23 5.5
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 23 5.5
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 23 5.5
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 23 5.5
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 23 7.2
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 23 7.2
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 23 9.6
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 23 9.6
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 23 9.6
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 23 9.6
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 2.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -2
Query: 129 EVLIQGIALGTEVYCIVPRMGYIESLTKQ 43
+VLI+ +A+ ++Y I+ + Y+ S T Q
Sbjct: 2 DVLIEWVAIYPQIYDILEHINYVPSNTLQ 30
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 24.2 bits (50), Expect = 3.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 105 VLFLELTLLCIIYFFFIKQGDVMN 176
VLFL LTLL FFF D+ N
Sbjct: 626 VLFLNLTLLNFASFFFFMVLDLGN 649
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 23.4 bits (48), Expect = 5.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 129 LCIIYFFFIKQGDVMN 176
L ++YFFFI G +MN
Sbjct: 902 LILLYFFFIISGIMMN 917
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 23.4 bits (48), Expect = 5.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 266 SKSKVAPQFEPE*PLGLFLNIFQN 195
SK + F P PLGL + +F +
Sbjct: 305 SKDVLITNFHPSMPLGLIMGVFNS 328
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 23.4 bits (48), Expect = 5.5
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = +3
Query: 105 VLFLELTLLCIIYFFFIKQGDVM 173
++++ ++C I F +IK GD++
Sbjct: 166 IIWILWLIICCILFVYIKSGDLI 188
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 23.4 bits (48), Expect = 5.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 173 EWSRSLDDFEKYLKKVLVVTPARTGERPL 259
EW L +F+K L + TP G PL
Sbjct: 26 EWPLLLKNFDKLLVRTGHYTPIPCGNNPL 54
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 23.0 bits (47), Expect = 7.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -3
Query: 119 FKE*HWGRRFIVLYPGWAILNHLQN 45
F HW R+ ++ PG L H++N
Sbjct: 473 FSAEHWYRKGRIIKPGAQPLKHVKN 497
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 23.0 bits (47), Expect = 7.2
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -2
Query: 126 VLIQGIALGTE-VYCIVPRMGYIESL 52
V+I G + T +Y ++PR+ ++ESL
Sbjct: 109 VMIFGWLVSTGFMYALIPRLSFLESL 134
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 22.6 bits (46), Expect = 9.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 170 NEWSRSLDDFEKYLKKVL 223
++ SR D E YLKKVL
Sbjct: 317 SDGSRDRQDVEDYLKKVL 334
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 22.6 bits (46), Expect = 9.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 63 YSPSWVQYNKPPSP 104
YSP+ + N PPSP
Sbjct: 418 YSPTTLSTNAPPSP 431
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 22.6 bits (46), Expect = 9.6
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +2
Query: 134 HNLFFFYKTG*CNEWSRSLDDFEKYLKKVLVV 229
H L F EW LDD + ++K ++ V
Sbjct: 743 HRLLTFQTNPEELEWQLFLDDTQAFVKSIIAV 774
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 22.6 bits (46), Expect = 9.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 96 PSPVLFLELTLLCIIYFFFIKQGDVMN 176
P PV+ L + C+I +F + G+VMN
Sbjct: 179 PLPVI-CGLIVGCLIGYFIYRGGNVMN 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,068,706
Number of Sequences: 5004
Number of extensions: 18891
Number of successful extensions: 55
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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