Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P11
         (268 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0351 + 3857296-3857324,3857888-3858116,3858207-3858368           28   0.89 
11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262...    27   1.6  
11_06_0640 + 25744048-25745021,25745128-25745273,25747870-257479...    26   3.6  
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779...    26   4.8  
08_02_0059 - 11778739-11780998,11781744-11781751                       25   6.3  
05_06_0286 + 26932395-26933155,26934287-26934407,26934496-269347...    25   6.3  
06_03_0784 - 24557089-24557198,24557296-24560725                       25   8.3  
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564...    25   8.3  
01_06_0355 + 28657833-28660665,28660762-28661126                       25   8.3  

>10_01_0351 + 3857296-3857324,3857888-3858116,3858207-3858368
          Length = 139

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 195 SSRLLDHSLHHPVL*KKN 142
           S R LDHS+HHPV  + N
Sbjct: 40  SERCLDHSMHHPVAEQPN 57


>11_06_0410 -
           23223701-23223714,23223863-23225159,23225314-23226225,
           23226952-23227023,23227323-23227471,23227879-23227912
          Length = 825

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 203 KYLKKVLVVTPARTGERPLIYY 268
           ++LK V+V TPAR GER ++ +
Sbjct: 460 RWLKYVIVNTPARYGERTIVIH 481


>11_06_0640 +
           25744048-25745021,25745128-25745273,25747870-25747945,
           25747996-25748230
          Length = 476

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 75  WVQYNKPPSPVLFLELTLLCIIYFF 149
           W+   + P+P+L   L+LL   YFF
Sbjct: 80  WLSAGEAPAPLLVWRLSLLLSTYFF 104


>08_02_1170 +
           24876197-24877070,24877563-24877606,24877805-24877900,
           24877999-24878544
          Length = 519

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 72  SWVQYNKPPSPVLFLELTL-LCIIY 143
           SW+ +  P + +LFL L L LC++Y
Sbjct: 242 SWMSFGLPMAIILFLALWLTLCLMY 266


>08_02_0059 - 11778739-11780998,11781744-11781751
          Length = 755

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/39 (25%), Positives = 25/39 (64%)
 Frame = -2

Query: 150 KKNRLCKEVLIQGIALGTEVYCIVPRMGYIESLTKQIRS 34
           K+++  + ++I+G+ +GTE+   +  M ++  L+ + RS
Sbjct: 432 KRSKFLRVIMIEGLNIGTELPEAIGGMVHLRYLSTRCRS 470


>05_06_0286 +
           26932395-26933155,26934287-26934407,26934496-26934772,
           26934934-26935094
          Length = 439

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 189 RLLDHSLHHPVL*KKNRLCKEVLIQGIALGTEVYC 85
           R +  +L HP L K+    +E+L   + +  EV+C
Sbjct: 176 RRIPRTLPHPCLRKRPMTWEELLADSLDMSDEVHC 210


>06_03_0784 - 24557089-24557198,24557296-24560725
          Length = 1179

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -2

Query: 138 LCKEVLIQGIALGTEVYCIVPRMGYIESLTKQIRSRQALELLG 10
           +CK   ++ + +  +V C  PR+     L K+++  + L+L G
Sbjct: 560 VCKLQRLRTLIIWNKVRCFCPRVCVDADLFKELKGLRLLDLTG 602


>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
            21556524-21556620,21557113-21557141,21557620-21557781,
            21557981-21558061,21558156-21558314,21558394-21558510,
            21558598-21558666,21558753-21558831,21560884-21561050,
            21561109-21561229,21561522-21561649,21562293-21562361,
            21562408-21562539,21562619-21562991,21563274-21563398,
            21563500-21563655,21563785-21564198,21564634-21564691,
            21566522-21566648,21568047-21568305,21569005-21569104,
            21569231-21569317,21569454-21569692,21569914-21569999,
            21570409-21570532,21571111-21574332
          Length = 2444

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 172  ITSPCFIKKK*IMQRSVNSRNSTGDGGLLY 83
            I S  F+K   I Q  + +RN  G+ GL +
Sbjct: 1709 ILSSSFVKDTNIFQSPIYTRNEPGESGLCF 1738


>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 165 HPVL*KKNRLCKEVLIQGI-ALGTEVYCIV 79
           HP+  KK+RL K VLI  I A G    C++
Sbjct: 704 HPLQGKKSRLLKVVLIPSILATGIIAICLL 733


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,601,802
Number of Sequences: 37544
Number of extensions: 106852
Number of successful extensions: 227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)