Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P11
         (268 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr...    29   0.60 
Z50874-11|CAA90766.1|  259|Caenorhabditis elegans Hypothetical p...    28   0.79 
U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AC024877-13|AAF60901.2|  710|Caenorhabditis elegans Nematode ast...    25   5.6  
Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF067950-6|AAG24156.2|  372|Caenorhabditis elegans Serpentine re...    25   9.7  
AC024756-10|AAK29882.2|  326|Caenorhabditis elegans Hypothetical...    25   9.7  

>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical
           protein C16A3.3 protein.
          Length = 1743

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = -2

Query: 249 SPVRAGVTTRTFFKYFSKSSRLLDHSLHHPVL*KKNRLCKEVLIQGIALGTEVYCIV 79
           +P + G   R    +  ++S++L  + H P +   +R+ K    +GI++G +V C V
Sbjct: 289 NPEKLGKAIRAIVMFCQQNSKILVLNAH-PDIVAASRIEKRTSFEGISIGDKVKCTV 344


>Z50874-11|CAA90766.1|  259|Caenorhabditis elegans Hypothetical
           protein R10E4.5 protein.
          Length = 259

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 14/34 (41%), Positives = 26/34 (76%)
 Frame = -2

Query: 114 GIALGTEVYCIVPRMGYIESLTKQIRSRQALELL 13
           GIA+ T V+ I  R+G+I++ T + ++++ALE+L
Sbjct: 134 GIAVDTHVHRISNRLGWIKTSTPE-KTQKALEIL 166


>U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical
           protein F45F2.7 protein.
          Length = 623

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 224 LGLFLNIFQNHLDF*TIHYITLFYKKK 144
           +GLFL IF     F TI   T+ Y KK
Sbjct: 387 IGLFLGIFFMTAAFVTIGIYTMLYNKK 413


>AC024877-13|AAF60901.2|  710|Caenorhabditis elegans Nematode
           astacin protease protein30 protein.
          Length = 710

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 57  IQYSPSWVQYNKPPSPVLFLELT 125
           + Y   W+Q   PP P L +E T
Sbjct: 566 VSYKLQWIQGTPPPPPFLSIERT 588


>Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK858.6 protein.
          Length = 619

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 261 IKGRSPVRAGVTTRTFF 211
           +KGR+P+R  V T T F
Sbjct: 381 MKGRNPIRCAVQTATLF 397


>AF067950-6|AAG24156.2|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein122 protein.
          Length = 372

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 151 KKK*IMQRSVNSRNSTGDGGLLYC 80
           KKK  M    N+RNS G  GL+ C
Sbjct: 252 KKKAKMSSVPNNRNSRGKTGLVLC 275


>AC024756-10|AAK29882.2|  326|Caenorhabditis elegans Hypothetical
           protein Y34D9A.2 protein.
          Length = 326

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 84  YNKPPSPVLFLELTLLCII 140
           +   PSP+L L  T++CII
Sbjct: 19  HTSAPSPILALIFTIICII 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,752,520
Number of Sequences: 27780
Number of extensions: 99149
Number of successful extensions: 233
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)