Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P10
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   0.80 
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   4.3  
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    25   5.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    24   7.4  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    24   7.4  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    24   9.8  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    24   9.8  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    24   9.8  

>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 181 SNAPGLGNGLLDRTRGSNARCTTSTL 258
           SN PGLG+GLL+R +    R T + L
Sbjct: 50  SNIPGLGSGLLERIKDIVQRPTDTQL 75


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 302 LLIFILIVVYSF*FW 346
           LLIF+ I++Y+F FW
Sbjct: 285 LLIFLPILIYAFTFW 299


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 102 SNGIATFSEISMRIPNPL 49
           SNGI  FS +  R+P P+
Sbjct: 195 SNGIQLFSNVKQRVPVPV 212


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 137  YKAKAKELSHIYHDRPMR 190
            YKAK  E SH+++D+ ++
Sbjct: 1849 YKAKLGEKSHLHYDKELK 1866


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 110 LKEMLGNPSYKAKAK 154
           L+E+ GNP+YK +A+
Sbjct: 277 LRELTGNPNYKTEAE 291


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 62  SQILFLQLISCLHF 21
           S I FLQ+ISCL F
Sbjct: 387 SSIRFLQIISCLSF 400


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 98   LEAALKEMLGNPSYKAKAKELSHIYHDRPMRPGSEMVY 211
            ++ A +EM    SYK   K L +I+     RPG    Y
Sbjct: 1367 VQQAKEEMETLFSYKTSGKSLLNIWRTPNERPGRHFYY 1404


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 269 LASWYQKIYLDLLIFILIVVYS 334
           L  WY++ ++ +LIFI+ ++ S
Sbjct: 80  LLPWYRRYFIWILIFIVALICS 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,724,585
Number of Sequences: 5004
Number of extensions: 35325
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)