Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_P10
(396 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1193 + 25125419-25126810 31 0.25
07_03_0708 - 20865786-20867153 29 1.0
05_05_0055 + 21977546-21978061,21978144-21978162,21978168-219784... 29 1.0
05_03_0334 - 12550621-12550722,12552038-12552226 29 1.0
01_04_0055 + 15462137-15462324,15467316-15467421,15468589-154688... 29 1.0
02_04_0297 + 21709873-21711375 29 1.8
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 28 2.4
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 28 2.4
06_03_0663 + 23248869-23250371 28 3.1
08_02_1194 + 25147935-25149455 27 5.5
12_01_0406 - 3212007-3212757,3212856-3212988,3215840-3215927,321... 27 7.2
02_05_0477 - 29339649-29340253,29340880-29341492 27 7.2
07_01_1023 + 8840754-8842988,8843189-8843362 26 9.6
05_02_0043 + 5964749-5966406,5966725-5966791,5967174-5967329,596... 26 9.6
04_04_1043 - 30352002-30352005,30352088-30352522,30353934-303543... 26 9.6
01_06_0711 + 31388369-31388799,31388907-31389079,31389852-313899... 26 9.6
01_01_1042 + 8213782-8214090 26 9.6
>08_02_1193 + 25125419-25126810
Length = 463
Score = 31.5 bits (68), Expect = 0.25
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Frame = +2
Query: 77 SENVAIPLEAALKEMLGNPSYKAKAK-ELSHI 169
++ +AI +E A+ E+L NPS AKA+ E++H+
Sbjct: 259 TDTIAITVEWAMAELLRNPSVMAKARAEMNHV 290
>07_03_0708 - 20865786-20867153
Length = 455
Score = 29.5 bits (63), Expect = 1.0
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +1
Query: 130 SIIQSQS*GTVTYLSRSSNAPGLGNGLLDRTRGSNARCTTSTLSCLAGVLVPEDLSRSTH 309
S++ + G +Y RS A G + +L GS A+ T ++ +L L RSTH
Sbjct: 226 SLVSQLAVGRFSYCLRSDMADGGASPILF---GSLAKLTEGSVVQSTPLLKNPYLQRSTH 282
Query: 310 FYIN 321
+Y+N
Sbjct: 283 YYVN 286
>05_05_0055 +
21977546-21978061,21978144-21978162,21978168-21978486,
21978779-21978799,21980780-21980857,21981116-21981359
Length = 398
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 257 SVDVVHRALLPRVLSNRPFPSPGALDDR 174
+V VH ALLP + R PSPG L R
Sbjct: 65 AVQTVHAALLPSTTTTRRRPSPGRLPRR 92
>05_03_0334 - 12550621-12550722,12552038-12552226
Length = 96
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -2
Query: 269 ARQESVDVVHRALLPRVLSNRPFPSPGAL 183
AR +SVDVV A LP+ R FP+P AL
Sbjct: 34 ARTDSVDVVVGAALPQEEILRSFPTPEAL 62
>01_04_0055 +
15462137-15462324,15467316-15467421,15468589-15468807,
15469826-15470172,15471365-15471428,15471519-15471624,
15471709-15471849,15473619-15473767,15473942-15474107,
15474216-15474259
Length = 509
Score = 29.5 bits (63), Expect = 1.0
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 152 KELSHIYHDRPMRPGSEMVYWIEHVVATRGAPHLRSPALLASWYQKIYLDLL 307
KEL IY+ R + P ++++ I + V +P L + L + Y +YL LL
Sbjct: 216 KELLDIYNIRRIGPDTKVLGLIANPVKQSKSPILHNKCLQSIGYNAVYLPLL 267
>02_04_0297 + 21709873-21711375
Length = 500
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 8 VMADQNVNMKSVEERGFGIRIEISENVAIPLEAALKEMLGNPSYKAKAK-ELSHIYHDR 181
+MA ++ +V F + ++ +A+ LE + E+L NPS AKA+ EL + D+
Sbjct: 279 LMAAGKIDRVNVLNMLFEAFVAGADTMALTLEWVMAELLKNPSVMAKARAELRDVLGDK 337
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 239 RALLPRVLSNRPFPSPGALDDRDKYVTVP*LWL 141
+A LPR+L P PGA ++R + + V LWL
Sbjct: 929 QAALPRLLGAAAPPGPGARENRRQCLKVLRLWL 961
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 272 PARQESVDVVHRALLPRVLSNRPFPSPGALDDRDKY 165
PAR+ +V + L +L +RPFP+P R +Y
Sbjct: 14 PARRPAVSAASASRL--LLGHRPFPAPSPASSRSRY 47
>06_03_0663 + 23248869-23250371
Length = 500
Score = 27.9 bits (59), Expect = 3.1
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 8 VMADQNVNMKSVEERGFGIRIEISENVAIPLEAALKEMLGNPSYKAKAK-ELSHIYHDR 181
+MA ++ +V + F + ++ +A+ LE + E+L NP AKA+ EL + D+
Sbjct: 279 LMAAGKIDRVNVLDMLFEAFVAGADTMALTLEWVMAELLKNPGVMAKARAELRDVLGDK 337
>08_02_1194 + 25147935-25149455
Length = 506
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 77 SENVAIPLEAALKEMLGNPSYKAKAK 154
++ +AI ++ A+ E+L NPS AKA+
Sbjct: 301 TDTIAITVQWAMAELLRNPSIMAKAR 326
>12_01_0406 -
3212007-3212757,3212856-3212988,3215840-3215927,
3216124-3216489
Length = 445
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = -2
Query: 209 RPFPSPGALD---DRDKYVTVP*LWLCMMDFQAFPSGPLLMG*RRSLRFQCESQILFL 45
+P P GA+ RDK L+LC+ SG L+ +R R C +F+
Sbjct: 122 QPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFM 179
>02_05_0477 - 29339649-29340253,29340880-29341492
Length = 405
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +2
Query: 149 AKELSHIYHDRPMRPGSEMVYWIEHVVATRGAPHLRSPALLASWYQKIYLDLLI 310
A++ + + R ++ VY+IE+ P+LR P ++ + ++ + L I
Sbjct: 271 ARQAEELIREVSFRARTDCVYFIENYTWNNNGPNLRHPPVIKNDFETHFTVLTI 324
>07_01_1023 + 8840754-8842988,8843189-8843362
Length = 802
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 119 MLGNPSYKAKAKELSHIYHDRPMRPGSEMVY-WI 217
M G P + + +++DRP RPG+++ + W+
Sbjct: 683 MSGMPRPVRATRATAEMFNDRPRRPGNKLEFRWV 716
>05_02_0043 +
5964749-5966406,5966725-5966791,5967174-5967329,
5967782-5967865,5968020-5968073
Length = 672
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 391 LFYSQFLNFFNTYLIPE 341
LFY F+N F+++LIP+
Sbjct: 583 LFYRCFINLFSSFLIPQ 599
>04_04_1043 -
30352002-30352005,30352088-30352522,30353934-30354351,
30355173-30355419
Length = 367
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 135 DGFPSISFRAASNGIATFSEISMRIPNPLSSTDFMFT 25
D +P + A N +ATFS + I P++++DF T
Sbjct: 323 DSWPDL---ADDNSLATFSATQLSISIPMATSDFSTT 356
>01_06_0711 +
31388369-31388799,31388907-31389079,31389852-31389937,
31390041-31390090,31390598-31390665,31391490-31391674,
31391884-31391970,31392075-31392169,31392509-31392635
Length = 433
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 113 KEMLGNPSYKAKAKELSHIYHDRPMRPGSEMVYWIEH 223
KEMLG +K A L + H S ++ W +H
Sbjct: 147 KEMLGKHMWKFPAPFLMNTVHFTMQAVASRVIVWFQH 183
>01_01_1042 + 8213782-8214090
Length = 102
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 239 GAPHLRSPALLASW 280
G+PHLR ALLA W
Sbjct: 8 GSPHLRCSALLARW 21
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,877,246
Number of Sequences: 37544
Number of extensions: 228621
Number of successful extensions: 552
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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