Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P10
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   6.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   6.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   9.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   9.0  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 281 TRTPARQESVDVVHRALLPRVLS 213
           ++ P R + +DV+ R   P V +
Sbjct: 406 SKFPTRSKRIDVISRIFFPIVFA 428


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 281 TRTPARQESVDVVHRALLPRVLS 213
           ++ P R + +DV+ R   P V +
Sbjct: 406 SKFPTRSKRIDVISRIFFPIVFA 428


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +1

Query: 202 NGLLDRTRGSNARCTTSTLSCLAGVLVPEDLSRSTHFYINSSIFILILELNM 357
           NGL D  +G   R     +  LAG  +  D    T F     + +L L  NM
Sbjct: 295 NGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNM 346


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 123 SISFRAASNGIATFSEISMRIPN 55
           S  ++  +NG   F+E++ RI N
Sbjct: 377 SNKYQKIANGDLNFNEVNFRILN 399


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -2

Query: 206 PFPSPGALDDRDKYVTVP*LWLC 138
           PF  P  +  R   V +  +W+C
Sbjct: 151 PFTYPSKMSRRRAAVLIAIVWIC 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,667
Number of Sequences: 438
Number of extensions: 2651
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)