Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_P09
(251 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 26 0.66
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 0.88
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 25 1.5
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 24 3.5
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 23 4.7
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 23 6.2
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 23 6.2
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 23 8.2
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 23 8.2
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 23 8.2
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 26.2 bits (55), Expect = 0.66
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 177 KLLSNSKTQRALWANLHNFFAKLIVIKASLVKQNKVELL 61
K SN K A WANL + + KL + A++ N+ LL
Sbjct: 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 0.88
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -3
Query: 198 HAEFTTAKLLSNSKTQRALWANLHNFFAKLIVIKASLVKQNKVELLISVSILRG 37
+ + TAK L N + L FFA ++ + ++ +N V+L+ + L G
Sbjct: 525 NGSYCTAKNLCNLLILCKGFEGLETFFAYIVHLLHGVLNRNNVKLIYETAALTG 578
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 25.0 bits (52), Expect = 1.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 151 LRFRIGKKFSRGKLGMMMLTVDRFKN 228
+ +R+GKK G GM+ V+ N
Sbjct: 13 VHYRVGKKIGEGSFGMLFQGVNLINN 38
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 23.8 bits (49), Expect = 3.5
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = -3
Query: 228 VFESVDSQHHHAEFTTAKLLSNSKTQRALWANLHNFFAKLIVIKASLVKQNKVELLI--- 58
V +DS + T LL NSK+ L+ + I LV +E LI
Sbjct: 25 VATGIDSMPSKVDITPCDLLENSKSSAPLFVECNQESLHSIPGSLHLVPDASIERLIEKH 84
Query: 57 -SVSILRGTA 31
+V++LR A
Sbjct: 85 GAVNLLRQLA 94
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 23.4 bits (48), Expect = 4.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 144 LWANLHNFFAKLIVIKAS 91
LW H+FF K+I + AS
Sbjct: 17 LWILAHSFFVKIIYLWAS 34
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 23.0 bits (47), Expect = 6.2
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 114 KLIVIKASLVKQNKVELLISVSI-LRGTAVGNEFKE 10
K +IKA +KQN+++ L S S+ + VG + E
Sbjct: 605 KARLIKARFMKQNRLQELYSKSLNWKNVTVGQAYCE 640
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 23.0 bits (47), Expect = 6.2
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 14 LNSFPTAVPLKILTDINSSTLFCLTKLALITMSFAKKLCKFAHKAL 151
LN P P K L I L L L+ ++ + LCKF H L
Sbjct: 935 LNDDPGLSP-KWLHAIKKLLPLLLQNLQLLMVNPIQSLCKFVHSFL 979
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -3
Query: 225 FESVDSQHHHAEFTTAKLLSNSKTQRALWANLHNF 121
FES + + E + +LS+SK + W+ L ++
Sbjct: 156 FESSIEESYSTENKSPVILSSSKVPSSQWSRLWHY 190
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -1
Query: 224 LNLSTVSIIMPSLPRLNFFPIRKRKGPYGQIYTISL 117
LNL +S + ++ PI K ++YT+ L
Sbjct: 289 LNLILISFLSTKTDKIVLLPINALKDLIQRVYTVQL 324
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 22.6 bits (46), Expect = 8.2
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -3
Query: 183 TAKLLSNSKTQRALWANLHNFFAKLIVIKASLVKQNKVELLISVSILRGT 34
T ++L K ++ +++H + K + QNK++ ++SIL T
Sbjct: 354 TGEILKPRKKRQESTSSVHRIGKESSDRKDGISGQNKLQQFATISILNNT 403
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 923,172
Number of Sequences: 5004
Number of extensions: 14911
Number of successful extensions: 39
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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