Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P09
         (251 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0610 + 19307537-19308011,19308187-19310846                       26   3.7  
04_03_0357 + 14852584-14853058,14853116-14855754                       26   3.7  
11_01_0449 - 3473662-3475049,3476026-3476128,3476215-3476439,347...    26   4.8  
08_01_0535 - 4638954-4639127,4639894-4639944,4640287-4640352,464...    26   4.8  
06_03_1307 + 29218055-29218159,29218249-29218362,29218448-292186...    26   4.8  
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205...    26   4.8  
03_01_0230 + 1811071-1811236,1811346-1811458,1811566-1811744,181...    26   4.8  
02_03_0305 + 17527906-17528148,17528986-17529051,17529624-17530808     26   4.8  

>08_02_0610 + 19307537-19308011,19308187-19310846
          Length = 1044

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -3

Query: 90  LVKQNKVELLISVSILRGTAVGNEFKES 7
           ++++N  ELL +++   GT +G EF+ES
Sbjct: 292 VIEKNAPELLPNLTKSAGTGIGLEFRES 319


>04_03_0357 + 14852584-14853058,14853116-14855754
          Length = 1037

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -3

Query: 90  LVKQNKVELLISVSILRGTAVGNEFKES 7
           ++++N  ELL +++   GT +G EF+ES
Sbjct: 332 VIEKNAPELLRNLTKSAGTGIGLEFRES 359


>11_01_0449 -
           3473662-3475049,3476026-3476128,3476215-3476439,
           3476689-3476856,3477414-3477529,3477640-3477792,
           3477879-3478022,3478980-3479583
          Length = 966

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 157 FRIGKKFSRGKLGMMMLTVDR 219
           +RIGKK  +G+ G   L VD+
Sbjct: 47  YRIGKKLGQGQFGTTYLCVDK 67


>08_01_0535 -
           4638954-4639127,4639894-4639944,4640287-4640352,
           4640492-4640557,4640701-4640892,4641282-4641780,
           4642009-4642364
          Length = 467

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 210 SQHHHAEFTTAKLLSNSKTQRALWANLH 127
           + HHH +  T  L+SNS +   +    H
Sbjct: 137 TNHHHHQINTPSLMSNSSSNNGVMLQEH 164


>06_03_1307 +
           29218055-29218159,29218249-29218362,29218448-29218660,
           29218967-29219457,29219653-29219752,29219835-29219894,
           29220055-29220147,29220270-29220368,29220484-29220804
          Length = 531

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 177 KLLSNSKTQRALWAN-LHNFFAKLIVIKASLVKQNKVELLISVSILRGT 34
           K L    T  A+  N LH   A L +   S +  N  ELL ++SIL GT
Sbjct: 41  KALQEETTLHAILENALHR--AALTLADMSYLPTNAQELLSNISILEGT 87


>03_01_0265 +
           2046918-2049102,2052385-2052452,2052542-2052652,
           2053164-2053250,2053476-2053684,2054115-2054340,
           2054473-2054510,2054657-2054714,2055363-2055662,
           2055832-2055903,2055988-2056112,2056240-2056312,
           2056417-2056521
          Length = 1218

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 198 DDADCRQIQKLIIPSFIT 251
           D  DC+QI++ + PSF++
Sbjct: 521 DSVDCKQIEQYLSPSFLS 538


>03_01_0230 +
           1811071-1811236,1811346-1811458,1811566-1811744,
           1812024-1812156,1812216-1812494
          Length = 289

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 83  LTKLALITMSFAKKLCKFAHKALCVFELERS 175
           LT+LA + + + +  C++ H++L V   ERS
Sbjct: 141 LTELAAVDVEYKRVPCEYRHRSLSVRVDERS 171


>02_03_0305 + 17527906-17528148,17528986-17529051,17529624-17530808
          Length = 497

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 50  LTDINSSTLFCLTKLALITMSFAK 121
           L + +SST+FCLT   L+   F K
Sbjct: 84  LLENDSSTMFCLTTKKLVLQGFRK 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,571,042
Number of Sequences: 37544
Number of extensions: 82795
Number of successful extensions: 214
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)