Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P09
         (251 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z93389-4|CAE17923.1|  324|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z82055-4|CAB04846.1|  330|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AF040653-7|AAB95027.2|  334|Caenorhabditis elegans F-box b prote...    25   9.4  
AC024751-14|AAK21511.2|  151|Caenorhabditis elegans Hypothetical...    25   9.4  

>L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical
           protein K12H4.3 protein.
          Length = 352

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 129 HNFFAKLIVIKASLVKQNKV-ELLISVSILRGTAVGNEF 16
           H++  K + +KAS +KQ KV E+L   ++     VG EF
Sbjct: 278 HSYIEKQLAVKASNIKQAKVTEILAEKTV---DLVGKEF 313


>Z93389-4|CAE17923.1|  324|Caenorhabditis elegans Hypothetical
           protein T13F3.7 protein.
          Length = 324

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 26  PTAVPLKILTDINSSTLFC 82
           P +V LK++TD ++ T FC
Sbjct: 240 PPSVQLKLITDAHTLTAFC 258


>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 138 PIRPFAFSNWKEV*PW*TRHDDADCRQIQKLI 233
           P R F+F+    +  W T + D D  Q+QKL+
Sbjct: 85  PDRRFSFAETGFLWRWYTSNSDFDRHQLQKLV 116


>Z82055-4|CAB04846.1|  330|Caenorhabditis elegans Hypothetical
           protein T26H2.4 protein.
          Length = 330

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 74  LFCLTKLALITMSFAKKLCKFA 139
           L C+  + LI++SF  K CK A
Sbjct: 20  LRCMDVIQLISLSFCSKTCKSA 41


>AF040653-7|AAB95027.2|  334|Caenorhabditis elegans F-box b protein
           protein 54 protein.
          Length = 334

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +2

Query: 8   DSLNSFPTA-VPLKILTDI--NSST--LFCLTKLALITMSFAKKLC 130
           D  NSFP   +P K L D+  N  T  L C + ++  T  F ++LC
Sbjct: 2   DGANSFPLLRLPDKNLKDVLRNMRTIELVCFSMVSQKTKDFTRELC 47


>AC024751-14|AAK21511.2|  151|Caenorhabditis elegans Hypothetical
           protein Y18H1A.8 protein.
          Length = 151

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -3

Query: 228 VFESVDSQHHHAEFTTAK---LLSNSKTQRALWANLHNFFAKLIVIKASLVKQNKVELL 61
           VF++V S+HH+   T A    L+    T   L   L ++F   ++I        K +LL
Sbjct: 45  VFDNVISKHHYVFHTNAPHMYLVEAEDTNDGLPKFLDSYFELYMIIVHDCTDNGKYKLL 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,987,445
Number of Sequences: 27780
Number of extensions: 78676
Number of successful extensions: 207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)