Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P07
         (266 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0299 + 42594363-42594424,42594516-42594798,42595185-425954...    27   2.7  
09_02_0156 + 5070962-5072351,5072466-5073139                           26   4.8  
08_02_0558 + 18668856-18668926,18669064-18669175,18669834-186698...    26   4.8  
01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038     25   6.3  
08_02_1274 - 25787111-25787278,25787733-25787824,25788145-257882...    25   8.3  
01_01_0340 + 2727135-2727205,2727470-2727639,2728418-2728506,272...    25   8.3  
01_01_0338 + 2718212-2718251,2718519-2718607,2718997-2719050,271...    25   8.3  

>01_07_0299 + 42594363-42594424,42594516-42594798,42595185-42595409,
            42596395-42596592,42596871-42597325,42597824-42597962,
            42598035-42598113,42598686-42598924,42599058-42599362,
            42599449-42599560,42599640-42599804,42599933-42600071,
            42600111-42600219,42600733-42600823,42600940-42601064,
            42601148-42601297,42601383-42601455,42601630-42601810,
            42601888-42602046,42602939-42603085,42603176-42603220,
            42603305-42603382,42603565-42603719,42603875-42603927,
            42604012-42604090,42604271-42604357
          Length = 1310

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 5    EASIVSNVIVVLNHNH*--RNSF*YSVFDHFVTKQI 106
            +A + +    +LNH+    R  + Y +FD FVTKQ+
Sbjct: 982  KAMVEAKFTTMLNHSRTLLRKRWLYGIFDDFVTKQL 1017


>09_02_0156 + 5070962-5072351,5072466-5073139
          Length = 687

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 140 G*SVKGGRCVRGPNKWYMSSVFNYYCFC 223
           G S+KGG C R P   +  ++F +Y +C
Sbjct: 16  GVSLKGGNCPRSP-PHFSITLFYFYKYC 42


>08_02_0558 +
           18668856-18668926,18669064-18669175,18669834-18669887,
           18670121-18670191,18670291-18670372,18670463-18670559,
           18670928-18670998
          Length = 185

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 155 GGRCVRGPNKWYMSSVFNYY 214
           G  C+R PNKW  S  FNY+
Sbjct: 133 GKYCLRMPNKWNFS--FNYF 150


>01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038
          Length = 650

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
 Frame = +2

Query: 110 GLSGVRSVCEG*SVKGGRCVRG-----PNKW 187
           GL GV S C G ++    C++G     PN W
Sbjct: 158 GLCGVNSKCSGSALSSCSCLKGFSIRDPNSW 188


>08_02_1274 -
           25787111-25787278,25787733-25787824,25788145-25788230,
           25788455-25788510,25788698-25788835,25789480-25789533
          Length = 197

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 149 VKGGRCVRGPNKWYMSSVFNYY 214
           +  GR   GPN+WY    F YY
Sbjct: 79  IPSGRYCFGPNEWYFG--FGYY 98


>01_01_0340 +
           2727135-2727205,2727470-2727639,2728418-2728506,
           2729017-2729070,2729310-2729380,2729504-2729585,
           2729678-2729774,2729902-2729972
          Length = 234

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 164 CVRGPNKWYMSSVFNYY 214
           C+R PNKW  S  FNY+
Sbjct: 185 CLRMPNKWNFS--FNYF 199


>01_01_0338 +
           2718212-2718251,2718519-2718607,2718997-2719050,
           2719201-2719271,2719375-2719456,2719561-2719657,
           2719752-2719873
          Length = 184

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 164 CVRGPNKWYMSSVFNY 211
           C+R PNKW  S  F+Y
Sbjct: 118 CLRMPNKWNFSFDFSY 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,742,279
Number of Sequences: 37544
Number of extensions: 38582
Number of successful extensions: 47
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)