Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P05
         (275 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   139   6e-35
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   139   8e-35
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   2.6  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    23   6.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    23   8.0  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    23   8.0  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    23   8.0  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  139 bits (337), Expect = 6e-35
 Identities = 64/85 (75%), Positives = 74/85 (87%)
 Frame = +1

Query: 19  RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPR 198
           RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+IPGLTD  VP+
Sbjct: 72  RVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPK 131

Query: 199 RLGPKRASKIRKLFNLKKEDDVRRY 273
           RLGPKRASKIR+ FNL KEDDVR++
Sbjct: 132 RLGPKRASKIRRFFNLSKEDDVRQF 156


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  139 bits (336), Expect = 8e-35
 Identities = 63/85 (74%), Positives = 74/85 (87%)
 Frame = +1

Query: 19  RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPR 198
           RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+IPGLTD  VP+
Sbjct: 72  RVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPK 131

Query: 199 RLGPKRASKIRKLFNLKKEDDVRRY 273
           RLGPKRASKIR+ FNL KEDDVR++
Sbjct: 132 RLGPKRASKIRRFFNLSKEDDVRQF 156


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 28  LLMSKGHSCYRPRRDGERKRKSVRGCIVD 114
           ++ SK +S  +P+  G  KRK+ R  +VD
Sbjct: 97  VVTSKKNSRSKPKNGGASKRKASRRTVVD 125


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -1

Query: 206 PRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQP 99
           P ++ TSP  +   + AP+   +   T    ++M P
Sbjct: 71  PSKKATSPKKATPAAVAPVEATSAVDTSEAVASMTP 106


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 67  DVVCSKSGLLTSRDVHGC 14
           D++C+   + TS D+H C
Sbjct: 852 DILCNIKSIATSLDIHIC 869


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 220 THAWDLDGGELHRQSVQEF 164
           T  WDL GGE + + +Q++
Sbjct: 861 TSEWDLKGGEEYVELMQQY 879


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 212 LGPRRRGTSPSVSPGISCAPLRTMTRAK 129
           L PRR    PSVS G S   + T + AK
Sbjct: 91  LAPRRTSPLPSVSAGQSHINIVTASGAK 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,074,557
Number of Sequences: 5004
Number of extensions: 18249
Number of successful extensions: 40
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)