Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_P05
(275 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 126 3e-30
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 125 4e-30
11_04_0329 - 16442298-16443734 29 0.40
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78... 29 0.53
07_03_0907 - 22490158-22490555,22490647-22491250 26 3.7
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 26 3.7
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 26 5.0
01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622 26 5.0
01_01_0205 + 1764034-1767601,1767934-1767944 26 5.0
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 25 6.5
04_03_0919 + 20820010-20821707 25 6.5
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 25 8.7
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 126 bits (303), Expect = 3e-30
Identities = 61/90 (67%), Positives = 73/90 (81%), Gaps = 2/90 (2%)
Frame = +1
Query: 10 TNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTD 183
T+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD
Sbjct: 69 TSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTD 128
Query: 184 GEVPRRLGPKRASKIRKLFNLKKEDDVRRY 273
E PR GPKRASKIRKLFNL K+DDVR+Y
Sbjct: 129 TEKPRMRGPKRASKIRKLFNLAKDDDVRKY 158
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 125 bits (302), Expect = 4e-30
Identities = 61/90 (67%), Positives = 72/90 (80%), Gaps = 2/90 (2%)
Frame = +1
Query: 10 TNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTD 183
T RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD
Sbjct: 69 TAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTD 128
Query: 184 GEVPRRLGPKRASKIRKLFNLKKEDDVRRY 273
E PR GPKRASKIRKLFNL K+DDVR+Y
Sbjct: 129 TEKPRMRGPKRASKIRKLFNLSKDDDVRKY 158
>11_04_0329 - 16442298-16443734
Length = 478
Score = 29.5 bits (63), Expect = 0.40
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = -1
Query: 230 RILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 60
R+L A G + + CAP M LAS+ P + LRF S RRG
Sbjct: 56 RLLAAHAALSPPGAVLRLLASLPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112
>03_01_0099 +
778521-778736,779521-779775,779831-779924,780064-780116,
780301-780339,781091-781159,781275-781445,781533-781598,
782533-782601,782993-783060,783308-783430,784095-784228,
784412-784506,784600-784644,784755-784814,785548-785599,
785674-785714,785857-785921,786704-786755,787021-787092
Length = 612
Score = 29.1 bits (62), Expect = 0.53
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 208 DLDGGELHRQSVQEFPVHLCGQ*PGLRLKG*HQQCNHEQTCVSS 77
D+D ++ + F + GQ P + L G H + NHEQTCV++
Sbjct: 333 DVDNDRINEADKEPFSGNHFGQ-PKI-LSGKHFRLNHEQTCVTA 374
>07_03_0907 - 22490158-22490555,22490647-22491250
Length = 333
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 236 NFRILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLAST 108
NF I + PRRR T+ + + + +P +T ++ + L ST
Sbjct: 147 NFTISRSAWTPRRRSTAEAEAEHEALSPFADLTNSREKPLVST 189
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 26.2 bits (55), Expect = 3.7
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 269 RRTSSSFFKLNNFRIL-DARLGPRRRGTSPSVSPGISCAPLRTMTRA 132
R T S + N+ R+ D+RL RRR S S S S + RT TR+
Sbjct: 189 RPTMSRSYSQNDRRVSSDSRLDRRRRSRSRSRSRSRSRSRSRTRTRS 235
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 19 RVRLLMSKGHSCYRPRRDGERK 84
R R+ M++GHS YRP G+ K
Sbjct: 441 RERIEMAQGHSLYRPSLLGQPK 462
>01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622
Length = 288
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 209 GPRRRGTSPSVSPGISCAPLRTMTRAKTER 120
G RRG +P+ + G +C+P T R + R
Sbjct: 216 GTPRRGAAPAGADGHACSPAWTPRRPRCRR 245
>01_01_0205 + 1764034-1767601,1767934-1767944
Length = 1192
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 251 FFKLNNFRILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLAST 108
FF+L N RILD G P V + L + +R++S+
Sbjct: 304 FFQLKNLRILDLSFNMNLLGHLPKVPTSLETLRLEGTNFSYAKRISSS 351
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 269 RRTSSSFFKLNNFRILDA-RLGPRRRGTSPSVSP 171
R SS F LNN +LDA R+G + + + S P
Sbjct: 796 RENSSFLFNLNNEYVLDAYRMGDKLKFANHSPDP 829
>04_03_0919 + 20820010-20821707
Length = 565
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 34 MSKGHSCYRPRRDGERKRKSVRGCIVDANL 123
M +S Y P + + K GC+VDANL
Sbjct: 476 MDGDYSFYFPMQVARKLLKGEIGCLVDANL 505
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 58 RPRRDGERKRKSVRGCIVD 114
R RR G +R +RGC+VD
Sbjct: 203 RRRRFGWLRRLGIRGCVVD 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,377,007
Number of Sequences: 37544
Number of extensions: 134217
Number of successful extensions: 344
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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