Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P05
         (275 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   141   7e-35
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    29   0.62 
U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical p...    27   2.5  
Z82052-5|CAB04828.1|  382|Caenorhabditis elegans Hypothetical pr...    26   3.3  
U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    26   4.4  
AC084154-3|AAK29869.1|  323|Caenorhabditis elegans Hypothetical ...    26   4.4  
U40951-3|AAG01564.2|  242|Caenorhabditis elegans Uncoordinated p...    25   5.8  
U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical pr...    25   5.8  
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ...    25   5.8  
AB107357-1|BAD89378.1|  242|Caenorhabditis elegans troponin I 2 ...    25   5.8  
Z49967-9|CAA90256.1|  328|Caenorhabditis elegans Hypothetical pr...    25   7.7  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  141 bits (341), Expect = 7e-35
 Identities = 66/88 (75%), Positives = 75/88 (85%)
 Frame = +1

Query: 10  TNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGE 189
           TN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  EI GLTD  
Sbjct: 69  TNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSV 128

Query: 190 VPRRLGPKRASKIRKLFNLKKEDDVRRY 273
           +PR+LGPKRASKIRKLFNL K DDV +Y
Sbjct: 129 LPRKLGPKRASKIRKLFNLTKHDDVTKY 156


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -1

Query: 206 PRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRGL*QEWPFDIKR 27
           P    T+P+ +P  +  P  T T AKT + ++T   +T     +P+      + PFD  +
Sbjct: 269 PTTTTTTPTTTPTTTTTPTTTTTTAKTTK-STTTTTKTTKTTSTPTTTTTTPKTPFDTSK 327

Query: 26  RT 21
            T
Sbjct: 328 CT 329


>U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical
           protein ZK418.11 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 120 PFSLSPGHCPQRC 158
           P S +PG CPQRC
Sbjct: 13  PKSCNPGECPQRC 25


>Z82052-5|CAB04828.1|  382|Caenorhabditis elegans Hypothetical
           protein T25E12.10 protein.
          Length = 382

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 191 TSPSVSPGISCAPLRTMTRAKTERLASTMQPRTD 90
           T+PS S  I CA   T+   K  +L S+ QPRT+
Sbjct: 113 TTPSTSKVI-CASGFTLVGTKCGKLVSSNQPRTE 145


>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -1

Query: 218 ARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSR 66
           +R  PR+R    S S   S  P R  TRA++   +      T    LSPSR
Sbjct: 351 SRSPPRKRPVRRSRSRSRSRTPNRNWTRARSRTRSQAKSSSTLTWPLSPSR 401


>AC084154-3|AAK29869.1|  323|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.6 protein.
          Length = 323

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 248 FKLNNFRILDARLGPRRRGTSPSVSPGISC 159
           +++ + RILD +LG R+ G   +VS  I+C
Sbjct: 125 YRMKSPRILDLKLGTRQHGDQATVSK-IAC 153


>U40951-3|AAG01564.2|  242|Caenorhabditis elegans Uncoordinated
           protein 27 protein.
          Length = 242

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 202 LGPKRASKIRKLFNLKKEDDVRR 270
           L P+R  K+RKL  +K  +D++R
Sbjct: 41  LTPERKKKLRKLLMVKAAEDLKR 63


>U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical
           protein T22F7.5 protein.
          Length = 462

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 106 CNHEQTCVSSHRHDVVCSKSG 44
           C H Q  + ++ H VVC+ SG
Sbjct: 22  CPHSQVALVNNDHPVVCTASG 42


>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
            protein Y48G1C.5 protein.
          Length = 1161

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 130  LALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDD 261
            L L   +K  QE+        P  +GPK A +IR L  L  + +
Sbjct: 1010 LLLTFGKKRTQEVTHYQYTGWPEHMGPKDAEEIRYLLKLVTDSE 1053


>AB107357-1|BAD89378.1|  242|Caenorhabditis elegans troponin I 2
           protein.
          Length = 242

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 202 LGPKRASKIRKLFNLKKEDDVRR 270
           L P+R  K+RKL  +K  +D++R
Sbjct: 41  LTPERKKKLRKLLMVKAAEDLKR 63


>Z49967-9|CAA90256.1|  328|Caenorhabditis elegans Hypothetical
           protein F54C9.11 protein.
          Length = 328

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +1

Query: 55  YRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI---PGLTDGEVPRRLGPKRASK 225
           Y+     E +R+     + ++ L V  L    +  +E+   PG+      +   P+  S 
Sbjct: 95  YKMVNTAEARREKAGKLLTESRLEVEVLQAEVRALKELISAPGMGQNHFKQTTSPEHKST 154

Query: 226 IRKLFN 243
           + KLFN
Sbjct: 155 LSKLFN 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,096,287
Number of Sequences: 27780
Number of extensions: 108184
Number of successful extensions: 266
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)