Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_P04
(370 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-... 152 2e-36
UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4; ... 151 5e-36
UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4; Endopterygot... 137 5e-32
UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular org... 135 2e-31
UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box fact... 133 8e-31
UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular orga... 132 2e-30
UniRef50_P67809 Cluster: Nuclease sensitive element-binding prot... 132 2e-30
UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular o... 131 3e-30
UniRef50_O46173 Cluster: Y-box protein; n=5; cellular organisms|... 131 5e-30
UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhanc... 129 2e-29
UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21; Tetrapod... 128 2e-29
UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius auratus... 125 2e-28
UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias... 121 4e-27
UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona intesti... 120 1e-26
UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;... 117 6e-26
UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box prot... 110 9e-24
UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: ... 109 2e-23
UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n... 98 5e-20
UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box ... 92 3e-18
UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia japo... 86 2e-16
UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n... 85 3e-16
UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1; ... 81 6e-15
UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis el... 78 4e-14
UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n... 75 4e-13
UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep: MG... 73 2e-12
UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;... 73 2e-12
UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triti... 71 7e-12
UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12; Bacteria... 68 5e-11
UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ ce... 67 8e-11
UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus laev... 67 8e-11
UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2; ... 66 2e-10
UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein; ... 63 1e-09
UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella ve... 63 1e-09
UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154; Ba... 63 2e-09
UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1; ... 62 4e-09
UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28; Bac... 62 4e-09
UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n... 61 5e-09
UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:... 61 5e-09
UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1; ma... 61 7e-09
UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38; Gam... 61 7e-09
UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3; Gammaproteobac... 60 1e-08
UniRef50_A5NZH6 Cluster: Putative cold-shock DNA-binding domain ... 60 1e-08
UniRef50_O65639 Cluster: Glycine-rich protein; n=8; Magnoliophyt... 60 1e-08
UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7; Bact... 60 1e-08
UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39; Gammapro... 60 1e-08
UniRef50_Q2J4H7 Cluster: Cold-shock DNA-binding domain protein; ... 60 2e-08
UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus lu... 60 2e-08
UniRef50_Q2LZN5 Cluster: GA14466-PA; n=3; Endopterygota|Rep: GA1... 59 2e-08
UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n... 59 3e-08
UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp. M... 58 4e-08
UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26; cel... 58 4e-08
UniRef50_P0A363 Cluster: Cold shock-like protein cspB; n=367; ro... 58 4e-08
UniRef50_Q74BX3 Cluster: Cold shock domain family protein; n=13;... 58 5e-08
UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2; Bacteria... 58 7e-08
UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona intesti... 58 7e-08
UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep: ... 58 7e-08
UniRef50_Q9VRN5 Cluster: Lin-28 homolog; n=1; Drosophila melanog... 58 7e-08
UniRef50_P72366 Cluster: Cold shock-like protein cspA; n=29; Bac... 58 7e-08
UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3; ... 57 9e-08
UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2; ... 57 9e-08
UniRef50_Q87NH9 Cluster: Cold shock transcriptional regulator Cs... 57 1e-07
UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA - Myxoco... 57 1e-07
UniRef50_Q9ZFK8 Cluster: CspB; n=4; cellular organisms|Rep: CspB... 57 1e-07
UniRef50_Q2JGE4 Cluster: Cold-shock DNA-binding domain protein; ... 55 4e-07
UniRef50_Q4UBG6 Cluster: Cold shock protein, putative; n=2; Thei... 55 4e-07
UniRef50_P39158 Cluster: Cold shock protein cspC; n=41; Bacteria... 55 4e-07
UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep... 55 5e-07
UniRef50_Q9PA96 Cluster: Temperature acclimation protein B; n=24... 54 6e-07
UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB... 54 6e-07
UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular... 54 6e-07
UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:... 54 1e-06
UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5; Deinoc... 54 1e-06
UniRef50_Q0BPU3 Cluster: Cold shock protein; n=1; Granulibacter ... 54 1e-06
UniRef50_Q9S1B7 Cluster: Cold shock-like protein cspA; n=10; Bac... 54 1e-06
UniRef50_P72188 Cluster: Cold shock protein capA; n=23; Proteoba... 54 1e-06
UniRef50_Q834D5 Cluster: Cold-shock domain family protein; n=1; ... 53 2e-06
UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2; Bacteroi... 53 2e-06
UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2; M... 53 2e-06
UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein; ... 53 2e-06
UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59; Alphapro... 53 2e-06
UniRef50_P92186 Cluster: Protein lin-28; n=5; Caenorhabditis|Rep... 52 3e-06
UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep: ... 52 3e-06
UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=... 52 3e-06
UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein; ... 52 3e-06
UniRef50_Q835L0 Cluster: Cold-shock domain family protein; n=24;... 52 4e-06
UniRef50_A4LXQ2 Cluster: Cold-shock DNA-binding domain protein; ... 52 4e-06
UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44; Bacteria... 51 6e-06
UniRef50_Q8D046 Cluster: Cold shock protein; n=14; Enterobacteri... 51 6e-06
UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2; C... 51 6e-06
UniRef50_UPI0000589074 Cluster: PREDICTED: similar to ENSANGP000... 51 8e-06
UniRef50_Q9I0L6 Cluster: Cold-shock protein CspD; n=12; Gammapro... 51 8e-06
UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78; B... 51 8e-06
UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep: AG... 51 8e-06
UniRef50_A6E2L2 Cluster: Cold-shock DNA-binding domain protein; ... 51 8e-06
UniRef50_A4A3Y7 Cluster: Cold-shock domain family protein; n=1; ... 51 8e-06
UniRef50_Q8G880 Cluster: Cold shock protein; n=3; Bifidobacteriu... 50 1e-05
UniRef50_Q4F6X8 Cluster: Cold shock protein; n=6; Gammaproteobac... 50 1e-05
UniRef50_A7DA86 Cluster: Putative cold-shock DNA-binding domain ... 50 1e-05
UniRef50_A5V9E9 Cluster: Putative cold-shock DNA-binding domain ... 50 1e-05
UniRef50_A3J3Q2 Cluster: Cold shock protein; n=7; Flavobacterial... 50 1e-05
UniRef50_Q9AN51 Cluster: ID534; n=52; Bacteria|Rep: ID534 - Brad... 50 2e-05
UniRef50_Q5JKD6 Cluster: Cold shock domain protein 2-like protei... 50 2e-05
UniRef50_Q28L70 Cluster: Cold-shock DNA-binding domain protein; ... 49 2e-05
UniRef50_Q0SKK0 Cluster: Cold shock protein; n=20; Bacteria|Rep:... 49 2e-05
UniRef50_A3YG84 Cluster: Cold-shock protein CspD; n=1; Marinomon... 49 2e-05
UniRef50_Q8KES2 Cluster: Cold shock-like protein CspG; n=9; Chlo... 48 4e-05
UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein; ... 48 4e-05
UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein; ... 48 4e-05
UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1; Ostre... 48 4e-05
UniRef50_Q11D48 Cluster: Cold-shock DNA-binding domain protein; ... 48 5e-05
UniRef50_Q0I3L0 Cluster: Cold shock-like protein; n=2; Proteobac... 48 5e-05
UniRef50_P0A353 Cluster: Cold shock-like protein cspA; n=288; Ba... 48 5e-05
UniRef50_Q82ZV8 Cluster: Cold-shock domain family protein; n=7; ... 48 7e-05
UniRef50_Q1B3F5 Cluster: Cold-shock DNA-binding domain protein; ... 48 7e-05
UniRef50_P46449 Cluster: Cold shock-like protein cspD; n=31; Bac... 48 7e-05
UniRef50_Q7NNC3 Cluster: Gsr0488 protein; n=1; Gloeobacter viola... 47 1e-04
UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2; Acti... 47 1e-04
UniRef50_Q89E28 Cluster: Cold shock protein; n=8; cellular organ... 47 1e-04
UniRef50_Q2S3Y3 Cluster: 'Cold-shock' DNA-binding domain, putati... 47 1e-04
UniRef50_Q28PH1 Cluster: Cold-shock DNA-binding domain protein; ... 47 1e-04
UniRef50_A4U251 Cluster: Cold shock DNA-binding domain protein; ... 47 1e-04
UniRef50_P0A971 Cluster: Cold shock-like protein cspD; n=12; Gam... 47 1e-04
UniRef50_Q7VLQ6 Cluster: Cold shock-like protein CspD; n=6; Prot... 46 2e-04
UniRef50_Q6YPQ4 Cluster: Cold shock protein; n=3; Firmicutes|Rep... 46 2e-04
UniRef50_Q5ZWM5 Cluster: Cold shock domain family protein; n=6; ... 46 2e-04
UniRef50_Q5FNZ7 Cluster: Cold shock protein; n=1; Gluconobacter ... 46 2e-04
UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6; c... 46 2e-04
UniRef50_Q982F0 Cluster: Cold-shock protein; n=3; Mesorhizobium ... 46 2e-04
UniRef50_Q8YIC6 Cluster: COLD SHOCK PROTEIN CSPA; n=4; Brucella|... 46 2e-04
UniRef50_Q03YA9 Cluster: Cold shock protein; n=1; Leuconostoc me... 46 2e-04
UniRef50_Q6N6T9 Cluster: Cold shock DNA binding protein; n=38; A... 46 3e-04
UniRef50_Q1AWL7 Cluster: Cold-shock DNA-binding domain protein; ... 46 3e-04
UniRef50_UPI000155640A Cluster: PREDICTED: hypothetical protein;... 45 4e-04
UniRef50_A3UBK6 Cluster: Cold-shock DNA-binding domain protein; ... 45 4e-04
UniRef50_A0Z255 Cluster: Cold shock protein, CspA family-like pr... 45 4e-04
UniRef50_A0YBV1 Cluster: CspA-like protein; n=17; Proteobacteria... 45 5e-04
UniRef50_Q48H64 Cluster: Cold shock domain protein CspD; n=7; Pr... 44 9e-04
UniRef50_O33052 Cluster: Small cold-shock protein; n=7; Coryneba... 44 9e-04
UniRef50_Q0APJ7 Cluster: Cold-shock DNA-binding domain protein; ... 44 9e-04
UniRef50_Q1VQ89 Cluster: Cold shock protein; n=8; Bacteroidetes|... 44 0.001
UniRef50_A4EHC3 Cluster: Cold shock protein; n=1; Roseobacter sp... 44 0.001
UniRef50_Q5NP11 Cluster: Cold shock protein; n=1; Zymomonas mobi... 43 0.002
UniRef50_A7HXE8 Cluster: Putative cold-shock DNA-binding domain ... 43 0.002
UniRef50_A2TNS0 Cluster: Cold shock protein; n=4; Bacteroidetes|... 43 0.002
UniRef50_Q1GHI4 Cluster: Cold-shock DNA-binding domain protein; ... 43 0.002
UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=... 43 0.002
UniRef50_Q2RNN9 Cluster: Cold-shock DNA-binding domain protein; ... 42 0.003
UniRef50_Q0YRJ0 Cluster: Cold-shock protein, DNA-binding; n=1; C... 42 0.003
UniRef50_Q0C0S6 Cluster: Cold shock DNA-binding protein; n=1; Hy... 42 0.003
UniRef50_A3VSH0 Cluster: Cold shock protein; n=1; Parvularcula b... 42 0.003
UniRef50_Q9HSS3 Cluster: Cold shock protein; n=7; Halobacteriace... 42 0.003
UniRef50_Q1AY27 Cluster: Cold-shock DNA-binding domain protein; ... 42 0.004
UniRef50_Q0M3I1 Cluster: Cold-shock protein, DNA-binding; n=1; C... 42 0.004
UniRef50_A2U2L8 Cluster: Cold shock protein; n=3; Bacteroidetes|... 42 0.004
UniRef50_Q9ZCP9 Cluster: Cold shock-like protein cspA; n=12; Bac... 42 0.004
UniRef50_Q5GRS9 Cluster: Cold shock protein; n=3; Wolbachia|Rep:... 42 0.005
UniRef50_P0A985 Cluster: Cold shock-like protein cspH; n=24; Ent... 42 0.005
UniRef50_Q4AG52 Cluster: Cold-shock protein, DNA-binding; n=3; B... 41 0.006
UniRef50_Q8I248 Cluster: Cold-shock protein, putative; n=3; Plas... 41 0.006
UniRef50_Q1GT29 Cluster: Cold-shock DNA-binding domain protein; ... 41 0.008
UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1; ... 40 0.011
UniRef50_A0ACJ4 Cluster: Putative DNA-binding protein; n=3; Acti... 40 0.011
UniRef50_Q1RHK6 Cluster: Cold shock-like protein cspA; n=2; Rick... 40 0.011
UniRef50_Q2RWM8 Cluster: Cold-shock DNA-binding domain protein; ... 40 0.014
UniRef50_A1SNP5 Cluster: Cold-shock protein, DNA-binding; n=26; ... 40 0.014
UniRef50_Q6F7A1 Cluster: Putative cold shock protein; n=2; Acine... 40 0.019
UniRef50_Q6ALH9 Cluster: Hypothetical cold-shock protein; n=1; D... 40 0.019
UniRef50_Q2RZT3 Cluster: Conserved domain protein; n=2; Saliniba... 40 0.019
UniRef50_Q3VJZ1 Cluster: Cold-shock protein, DNA-binding precurs... 39 0.025
UniRef50_A2UVR3 Cluster: Cold-shock DNA-binding domain protein; ... 39 0.025
UniRef50_Q5L9T7 Cluster: Cold shock-like protein; n=2; Bacteroid... 39 0.033
UniRef50_Q9ZAH1 Cluster: Cold shock protein C; n=10; Streptococc... 39 0.033
UniRef50_Q1QLF4 Cluster: Cold-shock DNA-binding domain protein; ... 38 0.044
UniRef50_A7BYF1 Cluster: Putative uncharacterized protein; n=1; ... 38 0.044
UniRef50_A4FKV9 Cluster: Putative DNA-binding protein; n=1; Sacc... 38 0.044
UniRef50_A1ZFN2 Cluster: Conserved domain protein; n=2; Flexibac... 38 0.044
UniRef50_UPI000150A0B6 Cluster: hypothetical protein TTHERM_0034... 38 0.077
UniRef50_A3WZM6 Cluster: Cold shock DNA binding protein; n=1; Ni... 38 0.077
UniRef50_A0UNB6 Cluster: Cold-shock DNA-binding domain protein; ... 38 0.077
UniRef50_A6W4V4 Cluster: Putative cold-shock DNA-binding domain ... 37 0.10
UniRef50_A2SHE7 Cluster: Cold-shock DNA-binding domain; n=1; Met... 37 0.10
UniRef50_Q56922 Cluster: Major cold shock protein; n=31; Enterob... 37 0.10
UniRef50_A3X5Q6 Cluster: Putative uncharacterized protein; n=1; ... 37 0.13
UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome s... 36 0.18
UniRef50_A6CF18 Cluster: Probable cold shock protein scoF; n=1; ... 36 0.24
UniRef50_UPI00006CB81E Cluster: conserved hypothetical protein; ... 36 0.31
UniRef50_Q475L4 Cluster: Cold-shock protein, DNA-binding; n=1; R... 36 0.31
UniRef50_Q9KI38 Cluster: Ysb; n=2; Agrobacterium tumefaciens|Rep... 36 0.31
UniRef50_Q74JX5 Cluster: Cold shock protein; n=5; Lactobacillus|... 35 0.41
UniRef50_Q6SK65 Cluster: Peptide synthetase; n=5; cellular organ... 35 0.41
UniRef50_Q03EZ0 Cluster: Cold shock protein; n=1; Pediococcus pe... 35 0.41
UniRef50_A0BFX7 Cluster: Chromosome undetermined scaffold_105, w... 35 0.41
UniRef50_Q5YVF2 Cluster: Putative cold shock protein; n=1; Nocar... 35 0.54
UniRef50_Q4FUZ6 Cluster: Possible guanine-specific ribonuclease ... 35 0.54
UniRef50_Q9HP26 Cluster: Cold shock protein; n=11; Halobacteriac... 35 0.54
UniRef50_Q1YTJ3 Cluster: Cold shock protein; n=1; gamma proteoba... 34 0.72
UniRef50_Q12K82 Cluster: Putative uncharacterized protein; n=1; ... 34 0.72
UniRef50_A0X3F5 Cluster: Cold-shock DNA-binding domain protein; ... 34 0.72
UniRef50_P81622 Cluster: Cold shock protein CspSt; n=6; Streptoc... 34 0.72
UniRef50_Q48493 Cluster: Major cold shock protein; n=50; Bacteri... 34 0.72
UniRef50_UPI00006CB6F6 Cluster: ''''Cold-shock'''' DNA-binding d... 34 0.95
UniRef50_Q49V75 Cluster: Putative oxidoreductase; n=1; Staphyloc... 34 0.95
UniRef50_Q127M7 Cluster: Cold-shock DNA-binding domain protein; ... 34 0.95
UniRef50_A1GFH1 Cluster: Cold-shock DNA-binding domain protein; ... 34 0.95
UniRef50_UPI000050F90E Cluster: COG1278: Cold shock proteins; n=... 33 1.3
UniRef50_Q9RBP7 Cluster: Cold shock protein 7.4; n=2; Rhodococcu... 33 1.3
UniRef50_Q4Q8I6 Cluster: RNA binding protein rbp16, putative; n=... 33 1.3
UniRef50_Q51929 Cluster: Major cold shock protein; n=74; Bacteri... 33 1.3
UniRef50_Q88Q61 Cluster: Cold shock DNA-binding domain protein; ... 33 1.7
UniRef50_Q5YWN0 Cluster: Putative uncharacterized protein; n=1; ... 33 1.7
UniRef50_A5EWK7 Cluster: Cold-shock DNA-binding domain protein; ... 33 1.7
UniRef50_A3S070 Cluster: Cold shock protein; n=1; Ralstonia sola... 33 1.7
UniRef50_A0CIJ2 Cluster: Chromosome undetermined scaffold_19, wh... 33 1.7
UniRef50_Q48AJ7 Cluster: Cold-shock DNA-binding domain family pr... 33 2.2
UniRef50_A6ENM6 Cluster: Cold shock protein; n=9; Bacteroidetes|... 33 2.2
UniRef50_UPI0000D57810 Cluster: PREDICTED: similar to CG9705-PA,... 32 2.9
UniRef50_Q82LM1 Cluster: Putative aryl-alcohol dehydrogenase; n=... 32 2.9
UniRef50_Q6XYV4 Cluster: Transcriptional regulator; n=2; Spiropl... 32 2.9
UniRef50_Q3W076 Cluster: Cold-shock DNA-binding domain; n=2; Fra... 32 2.9
UniRef50_A4KQU6 Cluster: Cold shock protein; n=7; Francisella tu... 32 2.9
UniRef50_Q6UUP0 Cluster: Putative polyprotein; n=1; Oryza sativa... 32 2.9
UniRef50_Q9VVA0 Cluster: CG9705-PA, isoform A; n=4; Diptera|Rep:... 32 2.9
UniRef50_Q0U631 Cluster: Putative uncharacterized protein; n=1; ... 32 2.9
UniRef50_Q5Z0N3 Cluster: Putative cold shock protein; n=1; Nocar... 32 3.8
UniRef50_Q5P4M3 Cluster: Probable cold shock family protein; n=1... 32 3.8
UniRef50_Q8RQV5 Cluster: Transposase; n=1; Lactobacillus helveti... 32 3.8
UniRef50_Q84IJ3 Cluster: Cold shock protein; n=1; Janthinobacter... 32 3.8
UniRef50_Q7WXG5 Cluster: Putative uncharacterized protein; n=1; ... 32 3.8
UniRef50_A4V785 Cluster: Putative cold shock domain transmembran... 32 3.8
UniRef50_Q98EU0 Cluster: Oxidoreductase; MocA; n=27; Bacteria|Re... 31 5.1
UniRef50_Q83N46 Cluster: Cold shock protein B; n=2; Tropheryma w... 31 5.1
UniRef50_Q5PBP1 Cluster: Cold shock protein; n=7; Anaplasmatacea... 31 5.1
UniRef50_Q15JF3 Cluster: Putative oxidoreductase; n=1; Streptomy... 31 5.1
UniRef50_A1TSW1 Cluster: Cold-shock DNA-binding domain protein; ... 31 5.1
UniRef50_Q019N2 Cluster: Chromosome 05 contig 1, DNA sequence; n... 31 5.1
UniRef50_Q248G5 Cluster: Putative uncharacterized protein; n=1; ... 31 5.1
UniRef50_A2ES44 Cluster: Leucine Rich Repeat family protein; n=1... 31 5.1
UniRef50_UPI00005100E5 Cluster: COG0667: Predicted oxidoreductas... 31 6.7
UniRef50_Q89JX0 Cluster: Oxidoreductase; n=26; Bacteria|Rep: Oxi... 31 6.7
UniRef50_Q39G79 Cluster: Aldo/keto reductase; n=5; Bacteria|Rep:... 31 6.7
UniRef50_Q1ZUW9 Cluster: Predicted membrane protein; n=3; Vibrio... 31 6.7
UniRef50_A4VQF2 Cluster: Cold-shock DNA-binding domain protein; ... 31 6.7
UniRef50_Q00258 Cluster: Norsolorinic acid reductase; n=17; Dika... 31 6.7
UniRef50_Q7UKQ7 Cluster: Similar to cold shock-like protein cspI... 31 8.9
UniRef50_Q6XUT6 Cluster: Oxido-reductase/dehydratase; n=3; Bacte... 31 8.9
UniRef50_Q11BU4 Cluster: Aldo/keto reductase; n=11; Proteobacter... 31 8.9
UniRef50_A0C7B7 Cluster: Chromosome undetermined scaffold_155, w... 31 8.9
UniRef50_Q9Y534 Cluster: Cold shock domain-containing protein C2... 31 8.9
>UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-box
protein - Bombyx mori (Silk moth)
Length = 272
Score = 152 bits (369), Expect = 2e-36
Identities = 72/75 (96%), Positives = 73/75 (97%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI RNNPRKAVRSVGDGEAVEFAV
Sbjct: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
Query: 326 VAGEKGYEAARVTGP 370
VAGEKG+EAA VTGP
Sbjct: 93 VAGEKGFEAAGVTGP 107
>UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4;
cellular organisms|Rep: Putative uncharacterized protein
- Lonomia obliqua (Moth)
Length = 254
Score = 151 bits (365), Expect = 5e-36
Identities = 72/75 (96%), Positives = 72/75 (96%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGE VEFAV
Sbjct: 24 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEVVEFAV 83
Query: 326 VAGEKGYEAARVTGP 370
VAGEKG EAA VTGP
Sbjct: 84 VAGEKGCEAAGVTGP 98
>UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4;
Endopterygota|Rep: Y-box protein Ct-p50 - Chironomus
tentans (Midge)
Length = 317
Score = 137 bits (332), Expect = 5e-32
Identities = 62/75 (82%), Positives = 69/75 (92%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
+IA KV+GTVKWFNVKSGYGFINRND K+D+FVHQ+AII+NNP+KAVRSVGDGE VEF V
Sbjct: 25 IIATKVTGTVKWFNVKSGYGFINRNDNKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDV 84
Query: 326 VAGEKGYEAARVTGP 370
VAGEKG EAA VTGP
Sbjct: 85 VAGEKGSEAANVTGP 99
>UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular
organisms|Rep: Y-box factor homolog - Aplysia
californica (California sea hare)
Length = 253
Score = 135 bits (327), Expect = 2e-31
Identities = 62/75 (82%), Positives = 68/75 (90%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
+IA +VSGTVKWFNVKSGYGFINR+DTKEDVFVHQTAI++NNPRK +RSVGDGE VEF V
Sbjct: 28 IIASQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDV 87
Query: 326 VAGEKGYEAARVTGP 370
V GEKG EAA VTGP
Sbjct: 88 VEGEKGNEAANVTGP 102
>UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box factor;
n=4; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to Y-Box factor - Strongylocentrotus purpuratus
Length = 326
Score = 133 bits (322), Expect = 8e-31
Identities = 62/75 (82%), Positives = 67/75 (89%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
V+A KVSGTVKWFNVK+GYGFINR+DTKEDVFVHQ+AI+RNNPRK RSVGDGE VEF V
Sbjct: 19 VLATKVSGTVKWFNVKNGYGFINRDDTKEDVFVHQSAIVRNNPRKYQRSVGDGEVVEFDV 78
Query: 326 VAGEKGYEAARVTGP 370
V G KG EAARVTGP
Sbjct: 79 VEGTKGNEAARVTGP 93
>UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular
organisms|Rep: ENSANGP00000031633 - Anopheles gambiae
str. PEST
Length = 166
Score = 132 bits (319), Expect = 2e-30
Identities = 62/75 (82%), Positives = 66/75 (88%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
VIA KV+G VKWFNVKSGYGFINR DT+EDVFVHQ+AI RNNP+KAVRSVGDGE VEF V
Sbjct: 5 VIATKVTGVVKWFNVKSGYGFINRGDTQEDVFVHQSAIARNNPKKAVRSVGDGEQVEFDV 64
Query: 326 VAGEKGYEAARVTGP 370
V GEKG EAA VTGP
Sbjct: 65 VIGEKGNEAANVTGP 79
>UniRef50_P67809 Cluster: Nuclease sensitive element-binding protein
1; n=65; Coelomata|Rep: Nuclease sensitive
element-binding protein 1 - Homo sapiens (Human)
Length = 324
Score = 132 bits (319), Expect = 2e-30
Identities = 62/75 (82%), Positives = 66/75 (88%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
VIA KV GTVKWFNV++GYGFINRNDTKEDVFVHQTAI +NNPRK +RSVGDGE VEF V
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 113
Query: 326 VAGEKGYEAARVTGP 370
V GEKG EAA VTGP
Sbjct: 114 VEGEKGAEAANVTGP 128
>UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular
organisms|Rep: DNA-binding protein A - Homo sapiens
(Human)
Length = 372
Score = 131 bits (317), Expect = 3e-30
Identities = 61/75 (81%), Positives = 66/75 (88%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
V+A KV GTVKWFNV++GYGFINRNDTKEDVFVHQTAI +NNPRK +RSVGDGE VEF V
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 145
Query: 326 VAGEKGYEAARVTGP 370
V GEKG EAA VTGP
Sbjct: 146 VEGEKGAEAANVTGP 160
>UniRef50_O46173 Cluster: Y-box protein; n=5; cellular
organisms|Rep: Y-box protein - Drosophila melanogaster
(Fruit fly)
Length = 359
Score = 131 bits (316), Expect = 5e-30
Identities = 63/75 (84%), Positives = 67/75 (89%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+A I NNP+KAVRSVGDGE VEF V
Sbjct: 58 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSA-IANNPKKAVRSVGDGEVVEFDV 116
Query: 326 VAGEKGYEAARVTGP 370
V GEKG EAA VTGP
Sbjct: 117 VIGEKGNEAANVTGP 131
>UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhancer
factor II; n=1; Gallus gallus|Rep: Rous sarcoma virus
transcription enhancer factor II - Gallus gallus
(Chicken)
Length = 298
Score = 129 bits (311), Expect = 2e-29
Identities = 60/75 (80%), Positives = 65/75 (86%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
V+A KV GTVKWFNV++GYGFINRNDTKEDVFVHQTAI +NNPRK + SVGDGE VEF V
Sbjct: 83 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLASVGDGETVEFDV 142
Query: 326 VAGEKGYEAARVTGP 370
V GEKG EAA VTGP
Sbjct: 143 VEGEKGAEAANVTGP 157
>UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21;
Tetrapoda|Rep: Y-box-binding protein 2 - Homo sapiens
(Human)
Length = 364
Score = 128 bits (310), Expect = 2e-29
Identities = 60/75 (80%), Positives = 65/75 (86%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
V+A +V GTVKWFNV++GYGFINRNDTKEDVFVHQTAI RNNPRK +RSVGDGE VEF V
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDV 148
Query: 326 VAGEKGYEAARVTGP 370
V GEKG EA VTGP
Sbjct: 149 VEGEKGAEATNVTGP 163
>UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius
auratus|Rep: Y box protein 2 - Carassius auratus
(Goldfish)
Length = 297
Score = 125 bits (302), Expect = 2e-28
Identities = 59/75 (78%), Positives = 63/75 (84%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
VIA V GTVKWFNV++GYGFINRNDTKEDVFVHQTAI +NNPRK +RSVGDGE VEF V
Sbjct: 16 VIATGVEGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDV 75
Query: 326 VAGEKGYEAARVTGP 370
V KG EAA VTGP
Sbjct: 76 VEAAKGSEAANVTGP 90
>UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias
latipes|Rep: Cold-shock domain protein - Oryzias latipes
(Medaka fish) (Japanese ricefish)
Length = 366
Score = 121 bits (292), Expect = 4e-27
Identities = 55/70 (78%), Positives = 60/70 (85%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
V GTVKWFNV++GYGFINRNDTKEDVFVHQTAI +NNPRK +RSVGDGE VEF V+ K
Sbjct: 3 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAK 62
Query: 341 GYEAARVTGP 370
G EAA VTGP
Sbjct: 63 GSEAANVTGP 72
>UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona
intestinalis|Rep: Y-box protein 1/2/3 - Ciona
intestinalis (Transparent sea squirt)
Length = 320
Score = 120 bits (288), Expect = 1e-26
Identities = 55/76 (72%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
V+A SG VKWFNV++GYGF+NR+D KEDVF+HQTAII+NNP+K +RSVGDGE VEF V
Sbjct: 21 VLASHCSGVVKWFNVRNGYGFVNRDDNKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDV 80
Query: 326 VAGEKGY-EAARVTGP 370
V GEKG EAA VTGP
Sbjct: 81 VEGEKGLPEAANVTGP 96
>UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-1 - Caenorhabditis elegans
Length = 208
Score = 117 bits (282), Expect = 6e-26
Identities = 54/75 (72%), Positives = 59/75 (78%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAII NNP K +RS+GD E V F +
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75
Query: 326 VAGEKGYEAARVTGP 370
V G KG EAA VTGP
Sbjct: 76 VEGSKGLEAASVTGP 90
>UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box protein
Ct-p40; n=1; Nasonia vitripennis|Rep: PREDICTED: similar
to Y-box protein Ct-p40 - Nasonia vitripennis
Length = 335
Score = 110 bits (264), Expect = 9e-24
Identities = 54/75 (72%), Positives = 58/75 (77%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
+IA KV+GTVKWFNVKSGYGFINR+ D+FV Q I N P KAVRSVGDGE VEF V
Sbjct: 64 IIANKVTGTVKWFNVKSGYGFINRSVFHFDIFVCQRCISNNLPSKAVRSVGDGEVVEFDV 123
Query: 326 VAGEKGYEAARVTGP 370
V GEKG EAA VTGP
Sbjct: 124 VIGEKGNEAANVTGP 138
>UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: DNA
binding protein - Canis familiaris (Dog)
Length = 96
Score = 109 bits (261), Expect = 2e-23
Identities = 50/62 (80%), Positives = 55/62 (88%)
Frame = +2
Query: 185 NVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEAARVT 364
NV++GYGFINRNDTKEDVFVHQTAI +NNPRK +RSVGDGE V+F VV GEKG EAA VT
Sbjct: 1 NVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVQFDVVEGEKGAEAANVT 60
Query: 365 GP 370
GP
Sbjct: 61 GP 62
>UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B3F UniRef100 entry -
Rattus norvegicus
Length = 292
Score = 97.9 bits (233), Expect = 5e-20
Identities = 50/74 (67%), Positives = 56/74 (75%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
VIA KV GT+K V +G G INRNDTKEDVFVHQTA+ +N+PRK +RSVGD E VEF
Sbjct: 26 VIATKVLGTMKCSIVWNGCGLINRNDTKEDVFVHQTAMKKNDPRKYLRSVGDAETVEFDF 85
Query: 326 VAGEKGYEAARVTG 367
V GEK EAA VTG
Sbjct: 86 VEGEKDVEAASVTG 99
>UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box
protein - Dugesia japonica (Planarian)
Length = 266
Score = 92.3 bits (219), Expect = 3e-18
Identities = 38/68 (55%), Positives = 53/68 (77%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
++G VKWFNVK GYGF+ RND +ED+F+HQ+AI+++NP +SVG+GE + F +V G K
Sbjct: 29 ITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPDHPRKSVGEGEEILFDIVKGAK 88
Query: 341 GYEAARVT 364
G EAA V+
Sbjct: 89 GNEAANVS 96
>UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia
japonica|Rep: Y-Box factor protein - Dugesia japonica
(Planarian)
Length = 178
Score = 85.8 bits (203), Expect = 2e-16
Identities = 42/68 (61%), Positives = 49/68 (72%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G VKW+NVK GYGFI+R+D EDVFVHQ+AI R P K +S+G+ E V F VV G KG
Sbjct: 5 GKVKWYNVKKGYGFIHRDDVDEDVFVHQSAISRCQPGKQ-KSLGEDEDVLFDVVKGSKGN 63
Query: 347 EAARVTGP 370
EA VTGP
Sbjct: 64 EAMNVTGP 71
>UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B82 UniRef100 entry -
Rattus norvegicus
Length = 147
Score = 85.4 bits (202), Expect = 3e-16
Identities = 41/57 (71%), Positives = 45/57 (78%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVE 316
VIA KV G V WFNV++GY FINRNDTKED FVHQT I +NNP K + SVGDGE VE
Sbjct: 91 VIAMKVLGIVTWFNVRNGYVFINRNDTKEDTFVHQTVIKKNNP-KYLHSVGDGETVE 146
>UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 192
Score = 81.0 bits (191), Expect = 6e-15
Identities = 35/73 (47%), Positives = 52/73 (71%)
Frame = +2
Query: 152 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 331
+++++GTVKWFN K G+GFI R+DT ED+FVH++ I + N +S+GDGE VEF ++
Sbjct: 31 SKRITGTVKWFNAKDGFGFITRHDTGEDIFVHKSCIFKPNRNHFTKSIGDGEIVEFGLI- 89
Query: 332 GEKGYEAARVTGP 370
A++VTGP
Sbjct: 90 ------ASKVTGP 96
>UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis
elegans|Rep: Y-box protein 2 - Caenorhabditis elegans
Length = 267
Score = 78.2 bits (184), Expect = 4e-14
Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK-AVRSVGDGEAVEFAV 325
I + G VKW++V YGFI+RND ++D+FVHQTAI ++ K +R++GD E V F +
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121
Query: 326 VAGEKGYEAARVTGP 370
V G+ G EAA VTGP
Sbjct: 122 VEGKNGPEAANVTGP 136
>UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC181B UniRef100 entry -
Rattus norvegicus
Length = 210
Score = 74.9 bits (176), Expect = 4e-13
Identities = 32/62 (51%), Positives = 45/62 (72%)
Frame = +2
Query: 185 NVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEAARVT 364
++++ YG++ +N + DVFVHQTAI +NNPRK + + GD E VEF V+ GEK EAA +
Sbjct: 37 SLRNIYGYVGKNSSGNDVFVHQTAIKKNNPRKYLHTTGDRETVEFDVIEGEKDAEAANII 96
Query: 365 GP 370
GP
Sbjct: 97 GP 98
>UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep:
MGC115344 protein - Xenopus laevis (African clawed frog)
Length = 221
Score = 72.9 bits (171), Expect = 2e-12
Identities = 32/41 (78%), Positives = 35/41 (85%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRN 268
V+A KV GTVKWFNV++GYGFINRNDTKEDVFVHQ A N
Sbjct: 31 VLATKVQGTVKWFNVRNGYGFINRNDTKEDVFVHQGAEAAN 71
>UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-4 - Caenorhabditis elegans
Length = 294
Score = 72.5 bits (170), Expect = 2e-12
Identities = 40/79 (50%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIIRNNPRKA-VRSVGDGEAV 313
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 314 EFAVVAGEKGYEAARVTGP 370
F +V G KG EAA VTGP
Sbjct: 144 VFDIVEGLKGPEAANVTGP 162
>UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triticum
aestivum|Rep: Cold shock domain protein 3 - Triticum
aestivum (Wheat)
Length = 231
Score = 70.9 bits (166), Expect = 7e-12
Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
+ E+V GTVKWFNV G+GFI+ +D ED+FVHQ+AI RS+ + +AVEF ++
Sbjct: 1 MGERVKGTVKWFNVTKGFGFISPDDGGEDLFVHQSAI----KSDGYRSLNENDAVEFEII 56
Query: 329 AGEKG-YEAARVTGP 370
G+ G +A+ VT P
Sbjct: 57 TGDDGRTKASDVTAP 71
>UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12;
Bacteria|Rep: Cold shock protein CspA - Pseudomonas
stutzeri (strain A1501)
Length = 136
Score = 68.1 bits (159), Expect = 5e-11
Identities = 37/74 (50%), Positives = 49/74 (66%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
V+AE+ +GTVKWFN GYGFI R + DVFVH A IR + RS+ +G+ VEF+V
Sbjct: 67 VMAERETGTVKWFNDAKGYGFIQRGN-GADVFVHYRA-IRGDGH---RSLAEGQQVEFSV 121
Query: 326 VAGEKGYEAARVTG 367
+ G+KG +A V G
Sbjct: 122 IQGQKGLQAEDVAG 135
>UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ
cell-specific Y-box-binding protein) (Contrin) (MSY2
homolog).; n=1; Xenopus tropicalis|Rep: Y-box-binding
protein 2 (Germ cell-specific Y-box-binding protein)
(Contrin) (MSY2 homolog). - Xenopus tropicalis
Length = 199
Score = 67.3 bits (157), Expect = 8e-11
Identities = 35/66 (53%), Positives = 42/66 (63%)
Frame = +2
Query: 173 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEA 352
V W+ + G ++ + + TAI RNNPRK +RSVGDGE VEF VV GEKG EA
Sbjct: 45 VPWYPMGRGV-HLHGGGARASLIGWDTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEA 103
Query: 353 ARVTGP 370
A VTGP
Sbjct: 104 ANVTGP 109
>UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus
laevis|Rep: LOC100036881 protein - Xenopus laevis
(African clawed frog)
Length = 131
Score = 67.3 bits (157), Expect = 8e-11
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
K++GT KWFN + GYGF+ +D D+FVHQ+ I + RS+ +GE VEF+V+ E
Sbjct: 3 KLTGTCKWFNAEKGYGFLTPDDGSPDIFVHQSTIHAD----GFRSLAEGEPVEFSVITDE 58
Query: 338 KG--YEAARVTGP 370
+ +AA VTGP
Sbjct: 59 RSGKLKAADVTGP 71
>UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 238
Score = 66.1 bits (154), Expect = 2e-10
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +2
Query: 152 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 331
+E+V GTVKWF+ G+GFI +D ED+FVHQ+++ RS+ DG+ VEF+V +
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSL----KSDGYRSLNDGDVVEFSVGS 58
Query: 332 GEKG-YEAARVTGP 370
G G +A VT P
Sbjct: 59 GNDGRTKAVNVTAP 72
>UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein;
n=5; cellular organisms|Rep: Cold-shock DNA-binding
domain protein - Psychrobacter cryohalolentis (strain
K5)
Length = 71
Score = 63.3 bits (147), Expect = 1e-09
Identities = 34/71 (47%), Positives = 45/71 (63%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
++ + G VKWFN G+GFI R D+ ED+FVH AI + RS+ DGE VEF+VV
Sbjct: 1 MSAREQGIVKWFNDSKGFGFIQR-DSGEDIFVHFRAIQGDG----YRSLKDGEKVEFSVV 55
Query: 329 AGEKGYEAARV 361
G+KG +A V
Sbjct: 56 EGDKGLQAEEV 66
>UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 671
Score = 63.3 bits (147), Expect = 1e-09
Identities = 32/69 (46%), Positives = 43/69 (62%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+G+VKWFN+ G+GFI R+D EDVFVHQ+AI RS+ +GE V+ + +KG
Sbjct: 484 TGSVKWFNLIKGFGFITRDDGGEDVFVHQSAI----KASGYRSLEEGEHVQLTISNSDKG 539
Query: 344 YEAARVTGP 370
A VT P
Sbjct: 540 KVAICVTSP 548
>UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154;
Bacteria|Rep: Cold shock-like protein cspG - Shigella
flexneri
Length = 70
Score = 62.9 bits (146), Expect = 2e-09
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
++ K++G VKWFN G+GFI +D +DVFVH TAI N R++ + + VEF++
Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNE----FRTLNENQKVEFSIE 56
Query: 329 AGEKGYEAARV 361
G++G AA V
Sbjct: 57 QGQRGPAAANV 67
>UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 189
Score = 61.7 bits (143), Expect = 4e-09
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Frame = +2
Query: 152 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 331
+++ +GTVKWF+ + G+GFI +D ED+FVHQT+ IR++ R++ +GE VEFAV
Sbjct: 4 SKRSTGTVKWFSGQKGFGFIAPDDGGEDLFVHQTS-IRSD---GFRTLSEGETVEFAVDH 59
Query: 332 GEKG-YEAARVT 364
GE G +A VT
Sbjct: 60 GEDGRTKAVEVT 71
>UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28;
Bacteria|Rep: Cold shock-like protein cspE - Shigella
flexneri
Length = 69
Score = 61.7 bits (143), Expect = 4e-09
Identities = 30/68 (44%), Positives = 40/68 (58%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
K+ G VKWFN G+GFI D +DVFVH +AI N +++ +G+ VEF + G
Sbjct: 3 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTN----GFKTLAEGQRVEFEITNGA 58
Query: 338 KGYEAARV 361
KG AA V
Sbjct: 59 KGPSAANV 66
>UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n=1;
unknown|Rep: UPI00015BD510 UniRef100 entry - unknown
Length = 86
Score = 61.3 bits (142), Expect = 5e-09
Identities = 30/67 (44%), Positives = 43/67 (64%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
++GTVKWF+ + GYGF+ R+D + DVFVH +AI N R+ +++ G+ VEF V K
Sbjct: 18 ITGTVKWFSKEKGYGFLTRDDNQGDVFVHFSAIDPN--RQGFKTLVQGQRVEFEVDQDSK 75
Query: 341 GYEAARV 361
G A V
Sbjct: 76 GPRAKNV 82
>UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:
Cold shock protein - Oceanobacter sp. RED65
Length = 171
Score = 61.3 bits (142), Expect = 5e-09
Identities = 33/66 (50%), Positives = 43/66 (65%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G VKWFNVK G+GFI R D EDVFVH R+ RS+ +G+ V+F+VV G+KG
Sbjct: 108 GLVKWFNVKKGFGFITR-DNGEDVFVH----FRSIRGTGHRSLSEGQNVKFSVVDGQKGL 162
Query: 347 EAARVT 364
+A V+
Sbjct: 163 QAEDVS 168
>UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Cold-shock
DNA-binding protein - marine gamma proteobacterium
HTCC2143
Length = 144
Score = 60.9 bits (141), Expect = 7e-09
Identities = 32/65 (49%), Positives = 44/65 (67%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVKWFNV GYGF+ R + E++FVH + I N RK +R +G+ +EF+VV G+KG
Sbjct: 79 GTVKWFNVSKGYGFVTR-ASGEEIFVHFRS-ISGNGRKVLR---EGQKIEFSVVDGDKGP 133
Query: 347 EAARV 361
+A V
Sbjct: 134 QAEDV 138
>UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38;
Gammaproteobacteria|Rep: Cold shock-like protein cspC -
Shigella flexneri
Length = 69
Score = 60.9 bits (141), Expect = 7e-09
Identities = 30/69 (43%), Positives = 42/69 (60%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
K+ G VKWFN G+GFI D +DVFVH +AI N ++++ +G+ VEF + G+
Sbjct: 3 KIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGN----GLKTLAEGQNVEFEIQDGQ 58
Query: 338 KGYEAARVT 364
KG A VT
Sbjct: 59 KGPAAVNVT 67
>UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3;
Gammaproteobacteria|Rep: Cold shock protein - Vibrio
angustum S14
Length = 68
Score = 60.5 bits (140), Expect = 1e-08
Identities = 32/68 (47%), Positives = 46/68 (67%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
K++GTVKWFN G+GFI+ D K DVFVH +AI + R++ +G++VEF V G+
Sbjct: 3 KLTGTVKWFNDDKGFGFISGTDGK-DVFVHFSAI----QAQGRRTLREGQSVEFIVTDGQ 57
Query: 338 KGYEAARV 361
KG +A+ V
Sbjct: 58 KGPQASEV 65
>UniRef50_A5NZH6 Cluster: Putative cold-shock DNA-binding domain
protein precursor; n=1; Methylobacterium sp. 4-46|Rep:
Putative cold-shock DNA-binding domain protein precursor
- Methylobacterium sp. 4-46
Length = 242
Score = 60.5 bits (140), Expect = 1e-08
Identities = 28/69 (40%), Positives = 45/69 (65%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
++SGTVKW++ G+GF++ D +DVFVH++A+ R + S+ +G+ V VV G+
Sbjct: 175 EMSGTVKWYDPAKGFGFVSVKDGGKDVFVHRSAL----ARAGLDSLAEGQQVTMGVVEGQ 230
Query: 338 KGYEAARVT 364
KG EA +T
Sbjct: 231 KGREAQSIT 239
Score = 37.9 bits (84), Expect = 0.058
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 170 TVKWFNVKSGYGFINRNDTKEDVFVHQTAI 259
TVKWFN + G+GF+ D D F+H A+
Sbjct: 65 TVKWFNKEKGFGFVELGDGSGDAFLHIRAV 94
>UniRef50_O65639 Cluster: Glycine-rich protein; n=8;
Magnoliophyta|Rep: Glycine-rich protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 299
Score = 60.5 bits (140), Expect = 1e-08
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +2
Query: 152 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 331
A + +G V WFN GYGFI +D ++FVHQ++I+ + RS+ G+AVEFA+
Sbjct: 8 AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIV----SEGYRSLTVGDAVEFAITQ 63
Query: 332 GEKG-YEAARVTGP 370
G G +A VT P
Sbjct: 64 GSDGKTKAVNVTAP 77
>UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7;
Bacteria|Rep: Cold shock-like protein cspJ - Salmonella
typhimurium
Length = 70
Score = 60.1 bits (139), Expect = 1e-08
Identities = 30/68 (44%), Positives = 41/68 (60%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
K++G VKWFN + G+GFI D +DVFVH +AI N R++ + + VEF+V G
Sbjct: 4 KITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNE----FRTLNENQEVEFSVEQGP 59
Query: 338 KGYEAARV 361
KG A V
Sbjct: 60 KGPSAVNV 67
>UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39;
Gammaproteobacteria|Rep: Cold shock protein cspA -
Salmonella typhimurium
Length = 70
Score = 60.1 bits (139), Expect = 1e-08
Identities = 30/69 (43%), Positives = 44/69 (63%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
K++G VKWFN G+GFI +D +DVFVH +A I+N+ +S+ +G+ V F + +G
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSA-IQND---GYKSLDEGQKVSFTIESGA 59
Query: 338 KGYEAARVT 364
KG A VT
Sbjct: 60 KGPAAGNVT 68
>UniRef50_Q2J4H7 Cluster: Cold-shock DNA-binding domain protein;
n=13; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Frankia sp. (strain CcI3)
Length = 67
Score = 59.7 bits (138), Expect = 2e-08
Identities = 27/65 (41%), Positives = 44/65 (67%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVKWFN + G+GFI+ + DVFVH ++I+ + +S+ +G++V+F +V G+KG
Sbjct: 4 GTVKWFNAEKGFGFISVDGGGPDVFVHYSSIVAD----GYKSLDEGQSVQFEIVQGQKGP 59
Query: 347 EAARV 361
+A V
Sbjct: 60 QADNV 64
>UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 106
Score = 59.7 bits (138), Expect = 2e-08
Identities = 32/74 (43%), Positives = 42/74 (56%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
+A + G VKWFN G+GFI +D E++FVHQT I RSV +GE VE+ V
Sbjct: 1 MATRARGKVKWFNATKGFGFIIPHDGSEEIFVHQTGI----SCAGFRSVWEGEEVEYDVD 56
Query: 329 AGEKGYEAARVTGP 370
+ +A VTGP
Sbjct: 57 DTDFAPKAVNVTGP 70
>UniRef50_Q2LZN5 Cluster: GA14466-PA; n=3; Endopterygota|Rep:
GA14466-PA - Drosophila pseudoobscura (Fruit fly)
Length = 168
Score = 59.3 bits (137), Expect = 2e-08
Identities = 30/67 (44%), Positives = 39/67 (58%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G KWFNV G+GF+ ND ++VFVHQ+ I RS+G+ E VEF +G
Sbjct: 23 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI----KMSGFRSLGEQEEVEFECHRTARGL 78
Query: 347 EAARVTG 367
EA RV+G
Sbjct: 79 EATRVSG 85
>UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n=2;
cellular organisms|Rep: Cold shock NA binding domain
protein - Aspergillus clavatus
Length = 125
Score = 58.8 bits (136), Expect = 3e-08
Identities = 31/69 (44%), Positives = 44/69 (63%)
Frame = +2
Query: 155 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAG 334
E+ +GTVKWFN + GYGFI +T ED+FVH A+ N +S+ +G+ V F V G
Sbjct: 58 ERQNGTVKWFNDEKGYGFIT-PETGEDLFVHFRAVEGN----GFKSLKEGQKVTFEAVQG 112
Query: 335 EKGYEAARV 361
+KG +A +V
Sbjct: 113 QKGRQADKV 121
>UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp.
MED297|Rep: Cold shock protein - Reinekea sp. MED297
Length = 153
Score = 58.4 bits (135), Expect = 4e-08
Identities = 31/70 (44%), Positives = 41/70 (58%)
Frame = +2
Query: 155 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAG 334
++ G VKWFNV G+GF+ R D EDVFVH R+ + RS+ +G+ V F VV
Sbjct: 84 DREEGLVKWFNVSKGFGFVTR-DNGEDVFVH----FRSIRGRGHRSLQEGQRVRFGVVES 138
Query: 335 EKGYEAARVT 364
KG +A VT
Sbjct: 139 SKGLQAEDVT 148
>UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26;
cellular organisms|Rep: Cold shock-like protein cspC -
Bacillus anthracis
Length = 65
Score = 58.4 bits (135), Expect = 4e-08
Identities = 30/67 (44%), Positives = 43/67 (64%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
+ G VKWFN + G+GFI R D +DVFVH +AI + +S+ +G+ VEF +V G +
Sbjct: 1 MQGRVKWFNAEKGFGFIERED-GDDVFVHFSAI----QQDGYKSLEEGQQVEFDIVDGAR 55
Query: 341 GYEAARV 361
G +AA V
Sbjct: 56 GPQAANV 62
>UniRef50_P0A363 Cluster: Cold shock-like protein cspB; n=367;
root|Rep: Cold shock-like protein cspB - Yersinia
enterocolitica
Length = 70
Score = 58.4 bits (135), Expect = 4e-08
Identities = 28/71 (39%), Positives = 46/71 (64%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
++ K++G VKWF+ G+GFI+ D +DVFVH +AI N+ +++ +G+ VEF++
Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGND----YKTLDEGQNVEFSIE 56
Query: 329 AGEKGYEAARV 361
G+KG A V
Sbjct: 57 QGQKGPSAVNV 67
>UniRef50_Q74BX3 Cluster: Cold shock domain family protein; n=13;
cellular organisms|Rep: Cold shock domain family protein
- Geobacter sulfurreducens
Length = 66
Score = 58.0 bits (134), Expect = 5e-08
Identities = 32/65 (49%), Positives = 40/65 (61%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G VKWFN G+GFI + D EDVFVH +AI + +S+ +GE V F VV G KG
Sbjct: 4 GRVKWFNDAKGFGFIEQ-DNGEDVFVHFSAI----QQDGFKSLAEGEQVSFDVVNGPKGL 58
Query: 347 EAARV 361
+AA V
Sbjct: 59 QAANV 63
>UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2;
Bacteria|Rep: Conserved domain protein - Stigmatella
aurantiaca DW4/3-1
Length = 100
Score = 57.6 bits (133), Expect = 7e-08
Identities = 29/66 (43%), Positives = 40/66 (60%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GTVKWFN G+GFI ++ EDVF H TAI + R++ +G+ V+F V G KG
Sbjct: 36 TGTVKWFNDAKGFGFITQDGGGEDVFCHHTAINMD----GFRTLQEGQKVQFDVARGPKG 91
Query: 344 YEAARV 361
+A V
Sbjct: 92 LQAQNV 97
>UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona
intestinalis|Rep: Zinc finger protein - Ciona
intestinalis (Transparent sea squirt)
Length = 193
Score = 57.6 bits (133), Expect = 7e-08
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFI---NRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
G KWFN K GYGFI + K DVFVHQ++I + RS+ +G+ V+F +
Sbjct: 29 GNCKWFNSKQGYGFITPDTSSQEKTDVFVHQSSI----DMEGFRSLQEGDRVKFWYKPSK 84
Query: 338 KGYEAARVTGP 370
KG EA +V GP
Sbjct: 85 KGLEAVKVVGP 95
>UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep:
Lin-28 homolog B - Homo sapiens (Human)
Length = 250
Score = 57.6 bits (133), Expect = 7e-08
Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFI---NRN----DTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFA 322
+G KWFNV+ G+GFI NR D DVFVHQ+ + + RS+ +GE VEF
Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFM----EGFRSLKEGEPVEFT 86
Query: 323 VVAGEKGYEAARVTGP 370
KG E+ RVTGP
Sbjct: 87 FKKSSKGLESIRVTGP 102
>UniRef50_Q9VRN5 Cluster: Lin-28 homolog; n=1; Drosophila
melanogaster|Rep: Lin-28 homolog - Drosophila
melanogaster (Fruit fly)
Length = 195
Score = 57.6 bits (133), Expect = 7e-08
Identities = 29/66 (43%), Positives = 38/66 (57%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G KWFNV G+GF+ ND ++VFVHQ+ I RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI----QMSGFRSLGEQEEVEFECQRTSRGL 96
Query: 347 EAARVT 364
EA RV+
Sbjct: 97 EATRVS 102
>UniRef50_P72366 Cluster: Cold shock-like protein cspA; n=29;
Bacteria|Rep: Cold shock-like protein cspA - Stigmatella
aurantiaca
Length = 68
Score = 57.6 bits (133), Expect = 7e-08
Identities = 29/66 (43%), Positives = 40/66 (60%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GTVKWFN G+GFI ++ EDVF H +AI + R++ +G+ VEF V G KG
Sbjct: 3 TGTVKWFNDAKGFGFITQDGGGEDVFCHHSAINMD----GFRTLQEGQKVEFEVTRGPKG 58
Query: 344 YEAARV 361
+A V
Sbjct: 59 LQAQNV 64
>UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3;
Bacteria|Rep: Cold-shock domain family protein -
Neptuniibacter caesariensis
Length = 149
Score = 57.2 bits (132), Expect = 9e-08
Identities = 30/70 (42%), Positives = 42/70 (60%)
Frame = +2
Query: 155 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAG 334
++ GTVKWFNV G+GFI R + +DVFVH RN + RS+ +G+ V F V
Sbjct: 81 DREQGTVKWFNVSKGFGFITRGE-DDDVFVH----FRNIRGRGHRSLAEGQKVRFYVRES 135
Query: 335 EKGYEAARVT 364
+KG +A V+
Sbjct: 136 DKGLQAEDVS 145
>UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2;
cellular organisms|Rep: Putative uncharacterized protein
- Ruminococcus obeum ATCC 29174
Length = 66
Score = 57.2 bits (132), Expect = 9e-08
Identities = 31/66 (46%), Positives = 42/66 (63%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVKWFN + GYGFI D DVFVH +AI N + +S+ +G+AV + + G +G
Sbjct: 4 GTVKWFNAEKGYGFITGED-GADVFVHFSAI--NG--EGFKSLDEGQAVTYDLTEGARGM 58
Query: 347 EAARVT 364
+AA VT
Sbjct: 59 QAANVT 64
>UniRef50_Q87NH9 Cluster: Cold shock transcriptional regulator CspA;
n=21; Bacteria|Rep: Cold shock transcriptional regulator
CspA - Vibrio parahaemolyticus
Length = 70
Score = 56.8 bits (131), Expect = 1e-07
Identities = 26/72 (36%), Positives = 44/72 (61%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
++ K +G+VKWFN G+GFI+ + ED+FVH +I+ +++ +G+ V + V
Sbjct: 1 MSNKSTGSVKWFNETKGFGFISPENGGEDLFVHFQSIVST----GFKTLSEGQKVSYVVE 56
Query: 329 AGEKGYEAARVT 364
G+KG +A VT
Sbjct: 57 QGKKGLQAGEVT 68
>UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA -
Myxococcus xanthus
Length = 68
Score = 56.8 bits (131), Expect = 1e-07
Identities = 29/66 (43%), Positives = 38/66 (57%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GTVKWFN G+GFI ++D DVF H TAI R++ +G+ VEF G KG
Sbjct: 3 TGTVKWFNDAKGFGFIAQDDGGADVFCHHTAI----QTDGFRTLAEGQKVEFETRKGPKG 58
Query: 344 YEAARV 361
+A V
Sbjct: 59 LQAENV 64
>UniRef50_Q9ZFK8 Cluster: CspB; n=4; cellular organisms|Rep: CspB -
Myxococcus xanthus
Length = 66
Score = 56.8 bits (131), Expect = 1e-07
Identities = 31/65 (47%), Positives = 38/65 (58%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVKWFN G+GFI D EDVF H TAI + R++ +G+ VEF V G KG
Sbjct: 4 GTVKWFNDAKGFGFI-AQDNGEDVFCHHTAINMD----GFRTLQEGQQVEFEVTRGPKGL 58
Query: 347 EAARV 361
+A V
Sbjct: 59 QAQNV 63
>UniRef50_Q2JGE4 Cluster: Cold-shock DNA-binding domain protein;
n=9; Bacteria|Rep: Cold-shock DNA-binding domain protein
- Frankia sp. (strain CcI3)
Length = 67
Score = 55.2 bits (127), Expect = 4e-07
Identities = 28/65 (43%), Positives = 40/65 (61%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVKWFN + G+GFI+ + DVFVH +AI +++ +G+ VEF V G+KG
Sbjct: 4 GTVKWFNSEKGFGFISVDGGGSDVFVHYSAI----QMDGYKALEEGQRVEFQVTQGQKGP 59
Query: 347 EAARV 361
+A V
Sbjct: 60 QADAV 64
>UniRef50_Q4UBG6 Cluster: Cold shock protein, putative; n=2;
Theileria|Rep: Cold shock protein, putative - Theileria
annulata
Length = 95
Score = 55.2 bits (127), Expect = 4e-07
Identities = 30/71 (42%), Positives = 40/71 (56%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
+++G KWFN K GYGFI + EDVFVHQ+ I + RS+ + E VE V+
Sbjct: 3 RLNGVCKWFNNKKGYGFITL-ENGEDVFVHQSEIYAD----GFRSLHENEKVELEVIMDN 57
Query: 338 KGYEAARVTGP 370
+A VTGP
Sbjct: 58 NRKKAIHVTGP 68
>UniRef50_P39158 Cluster: Cold shock protein cspC; n=41;
Bacteria|Rep: Cold shock protein cspC - Bacillus
subtilis
Length = 66
Score = 55.2 bits (127), Expect = 4e-07
Identities = 29/65 (44%), Positives = 40/65 (61%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVKWFN + G+GFI R + +DVFVH +AI +S+ +G+ V F V G +G
Sbjct: 4 GTVKWFNAEKGFGFIER-ENGDDVFVHFSAI----QSDGFKSLDEGQKVSFDVEQGARGA 58
Query: 347 EAARV 361
+AA V
Sbjct: 59 QAANV 63
>UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep:
Cold shock protein B - Streptomyces coelicolor
Length = 127
Score = 54.8 bits (126), Expect = 5e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+G VKWFN + G+GF++R+D DVFVH + + V S+ G+ VEF VVAG++G
Sbjct: 3 TGKVKWFNSEKGFGFLSRDD-GGDVFVHSSVL-----PAGVESLKPGQRVEFGVVAGQRG 56
Query: 344 YEA 352
+A
Sbjct: 57 DQA 59
>UniRef50_Q9PA96 Cluster: Temperature acclimation protein B; n=24;
Bacteria|Rep: Temperature acclimation protein B -
Xylella fastidiosa
Length = 85
Score = 54.4 bits (125), Expect = 6e-07
Identities = 29/65 (44%), Positives = 39/65 (60%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVKWFN G+GFI N+ D+FVH AI N +S+ +G+ V F V G+KG
Sbjct: 23 GTVKWFNDNKGFGFITSNN-GPDLFVHYRAIQGN----GFKSLQEGQKVSFVAVQGQKGM 77
Query: 347 EAARV 361
+A +V
Sbjct: 78 QADQV 82
>UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB
fold; n=2; Cryptosporidium|Rep: Cold shock RNA binding
domain of the OB fold - Cryptosporidium parvum Iowa II
Length = 135
Score = 54.4 bits (125), Expect = 6e-07
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
+SG KWF+ G+GFI +D ED+FVHQ +N + RS+ E VE+ + +K
Sbjct: 11 LSGVCKWFDSTKGFGFITPDDGSEDIFVHQ----QNIKVEGFRSLAQDERVEYEIETDDK 66
Query: 341 G-YEAARVTGP 370
G +A V+GP
Sbjct: 67 GRRKAVNVSGP 77
>UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular
organisms|Rep: Glycine-rich protein 2b - Arabidopsis
thaliana (Mouse-ear cress)
Length = 201
Score = 54.4 bits (125), Expect = 6e-07
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = +2
Query: 155 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAG 334
++ GTVKWF+ + G+GFI +D +D+FVHQ++I + RS+ E+VEF V
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSI----RSEGFRSLAAEESVEFDVEVD 68
Query: 335 EKGY-EAARVTGP 370
G +A V+GP
Sbjct: 69 NSGRPKAIEVSGP 81
>UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:
Cold shock protein - Methylococcus capsulatus
Length = 69
Score = 53.6 bits (123), Expect = 1e-06
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
++++ GTVKWFN G+GFI R + D+FVH R+ + +++ +G+ V F V
Sbjct: 1 MSQQQQGTVKWFNESKGFGFIQR-ENGSDLFVH----FRSIQGQGFKTLKEGQRVSFTEV 55
Query: 329 AGEKGYEAARV 361
AG+KG +A V
Sbjct: 56 AGQKGPQAENV 66
>UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5;
Deinococci|Rep: Cold shock protein homolog - Thermus
thermophilus
Length = 73
Score = 53.6 bits (123), Expect = 1e-06
Identities = 32/68 (47%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE--K 340
G VKWFN + GYGFI R + DVFVH TAI K R++ +G+ V F V G K
Sbjct: 4 GRVKWFNAEKGYGFIER-EGDTDVFVHYTAI----NAKGFRTLNEGDIVTFDVEPGRNGK 58
Query: 341 GYEAARVT 364
G +A VT
Sbjct: 59 GPQAVNVT 66
>UniRef50_Q0BPU3 Cluster: Cold shock protein; n=1; Granulibacter
bethesdensis CGDNIH1|Rep: Cold shock protein -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 100
Score = 53.6 bits (123), Expect = 1e-06
Identities = 26/63 (41%), Positives = 39/63 (61%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVKWFN GYGFI + ++DVFVH +A+ R +RS+ +G+ ++F + + G
Sbjct: 35 GTVKWFNPTKGYGFIAPSTGEKDVFVHISAV----QRAGLRSLNEGQQLDFEIEQQQNGR 90
Query: 347 EAA 355
AA
Sbjct: 91 AAA 93
>UniRef50_Q9S1B7 Cluster: Cold shock-like protein cspA; n=10;
Bacteria|Rep: Cold shock-like protein cspA - Shewanella
violacea
Length = 70
Score = 53.6 bits (123), Expect = 1e-06
Identities = 26/71 (36%), Positives = 43/71 (60%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
+++ +GTVKWFN G+GF+ +++ DVFVH AI + +++ +G+ V F V
Sbjct: 1 MSDSNTGTVKWFNEDKGFGFLTQDNGGADVFVHFRAI----ASEGFKTLDEGQKVTFEVE 56
Query: 329 AGEKGYEAARV 361
G KG +A+ V
Sbjct: 57 QGPKGLQASNV 67
>UniRef50_P72188 Cluster: Cold shock protein capA; n=23;
Proteobacteria|Rep: Cold shock protein capA -
Pseudomonas fragi
Length = 64
Score = 53.6 bits (123), Expect = 1e-06
Identities = 26/68 (38%), Positives = 40/68 (58%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
++++ SGTVKWFN + G+GFI +D+FVH AI +S+ +G+ V F
Sbjct: 1 MSQRQSGTVKWFNDEKGFGFITPQGGGDDLFVHFKAI----ESDGFKSLKEGQTVSFVAE 56
Query: 329 AGEKGYEA 352
G+KG +A
Sbjct: 57 KGQKGMQA 64
>UniRef50_Q834D5 Cluster: Cold-shock domain family protein; n=1;
Enterococcus faecalis|Rep: Cold-shock domain family
protein - Enterococcus faecalis (Streptococcus faecalis)
Length = 68
Score = 52.8 bits (121), Expect = 2e-06
Identities = 26/65 (40%), Positives = 42/65 (64%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G VKWF+ + GYGFI N+ ++++FVH TAI +S+ + ++VEF ++ G +G
Sbjct: 4 GIVKWFDNRKGYGFIVYNE-EDEIFVHFTAI----EGDGFKSLDENQSVEFEIMEGNRGL 58
Query: 347 EAARV 361
+AA V
Sbjct: 59 QAAHV 63
>UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2;
Bacteroidetes/Chlorobi group|Rep: Conserved domain
protein - Salinibacter ruber (strain DSM 13855)
Length = 110
Score = 52.8 bits (121), Expect = 2e-06
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+ TVKWF+ K GYGFI+ D EDVFVH + I ++ K ++S + V F + G KG
Sbjct: 3 TSTVKWFDAKKGYGFIHHPDDGEDVFVHYSNIQSDDDFKTLKS---DQHVRFEMNDGPKG 59
Query: 344 YEAARV 361
A V
Sbjct: 60 LHALEV 65
>UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2;
Marinomonas|Rep: Cold-shock protein, DNA-binding -
Marinomonas sp. MED121
Length = 79
Score = 52.8 bits (121), Expect = 2e-06
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
+ +K+ GTVKWFN G GFI R D + DVFVH +I+ + +++ G+AV F +
Sbjct: 1 MTDKLKGTVKWFNDSKGVGFIQR-DNEADVFVHYKSIV----SEGHKTLKKGQAVSFFIT 55
Query: 329 AGEKGYEAARV 361
+ G +A+ V
Sbjct: 56 ENDFGRQASEV 66
>UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein;
n=2; Marinomonas|Rep: Cold-shock DNA-binding domain
protein - Marinomonas sp. MED121
Length = 97
Score = 52.8 bits (121), Expect = 2e-06
Identities = 31/68 (45%), Positives = 42/68 (61%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
VSG VKWFN + G+GFI R + DVFVH AI N + R++ +G+ V F V G+K
Sbjct: 33 VSGIVKWFNDEKGFGFIER-EGGPDVFVHFRAI--NGTGR--RTLQEGQKVTFEVTQGQK 87
Query: 341 GYEAARVT 364
G +A V+
Sbjct: 88 GPQAENVS 95
>UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59;
Alphaproteobacteria|Rep: Cold shock protein cspA -
Rhizobium meliloti (Sinorhizobium meliloti)
Length = 69
Score = 52.8 bits (121), Expect = 2e-06
Identities = 26/59 (44%), Positives = 36/59 (61%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
SGTVKWFN G+GFI +D DVFVH +A+ R +RS+ +G+ V + +V K
Sbjct: 3 SGTVKWFNSTKGFGFIQPDDGATDVFVHASAV----ERAGMRSLVEGQKVTYDIVRDTK 57
>UniRef50_P92186 Cluster: Protein lin-28; n=5; Caenorhabditis|Rep:
Protein lin-28 - Caenorhabditis elegans
Length = 227
Score = 52.4 bits (120), Expect = 3e-06
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 340
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 341 GYEAARVTG 367
G EA V+G
Sbjct: 111 GREAYAVSG 119
>UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep:
Cold shock protein - Arthrobacter globiformis
Length = 67
Score = 52.4 bits (120), Expect = 3e-06
Identities = 26/66 (39%), Positives = 38/66 (57%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVKWFN + G+GFI +D+ DVFVH + I +++ + V+F + G KG
Sbjct: 4 GTVKWFNAEKGFGFITPDDSDGDVFVHYSEI----QTGGFKTLDENARVQFEIGQGAKGP 59
Query: 347 EAARVT 364
+A VT
Sbjct: 60 QATGVT 65
>UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=1;
uncultured bacterium BAC17H8|Rep: Predicted cold shock
family protein - uncultured bacterium BAC17H8
Length = 83
Score = 52.0 bits (119), Expect = 3e-06
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVKWFN + GYGFIN ++ DVFVH TA+ + + +G+ V + + G
Sbjct: 18 GTVKWFNTQKGYGFINPDEDGNDVFVHITAV----QNSGLTGLNEGQRVSYELAEQRNGR 73
Query: 347 EAA 355
AA
Sbjct: 74 FAA 76
>UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein;
n=30; Proteobacteria|Rep: Cold-shock DNA-binding domain
protein - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 249
Score = 52.0 bits (119), Expect = 3e-06
Identities = 26/67 (38%), Positives = 40/67 (59%)
Frame = +2
Query: 155 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAG 334
E+ SGTVK+FN G+GFI R+D + D FVH +A+ R + + +G+ V F +
Sbjct: 179 ERTSGTVKFFNTTKGFGFIARDDGQADAFVHISAV----QRAGMAGLEEGDRVAFDIEVD 234
Query: 335 EKGYEAA 355
++G AA
Sbjct: 235 DRGKFAA 241
Score = 45.2 bits (102), Expect = 4e-04
Identities = 21/54 (38%), Positives = 34/54 (62%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
GTVK+FN G+GF+ R+D EDVFVH +A+ + ++ + G+ + F +V
Sbjct: 86 GTVKFFNPSKGFGFVARDDGGEDVFVHISAV----EQAGLQGLASGQPLAFTLV 135
>UniRef50_Q835L0 Cluster: Cold-shock domain family protein; n=24;
Bacteria|Rep: Cold-shock domain family protein -
Enterococcus faecalis (Streptococcus faecalis)
Length = 66
Score = 51.6 bits (118), Expect = 4e-06
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GTVKWFN G+GFI + DVFVH +AI +++ +G+AV F + G++G
Sbjct: 3 TGTVKWFNSDKGFGFITA-ENGNDVFVHFSAI----QGDGFKTLEEGQAVTFEIEEGQRG 57
Query: 344 YEAARVT 364
+A VT
Sbjct: 58 PQATNVT 64
>UniRef50_A4LXQ2 Cluster: Cold-shock DNA-binding domain protein;
n=1; Geobacter bemidjiensis Bem|Rep: Cold-shock
DNA-binding domain protein - Geobacter bemidjiensis Bem
Length = 92
Score = 51.6 bits (118), Expect = 4e-06
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = +2
Query: 155 EKV--SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
EKV +G VKWFN G+GFI + D DVFVH ++I +S+ +G++V F VV
Sbjct: 24 EKVMANGVVKWFNDAKGFGFIEQ-DNGVDVFVHFSSI----QGDGFKSLVEGDSVTFDVV 78
Query: 329 AGEKGYEAARV 361
G KG +AA V
Sbjct: 79 QGAKGPQAANV 89
>UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44;
Bacteria|Rep: Cold shock-like protein - Acinetobacter
sp. (strain ADP1)
Length = 69
Score = 51.2 bits (117), Expect = 6e-06
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
++ V+GTVKWFN G+GFI + D+ DVF H I + +++ +G+ V F +V
Sbjct: 1 MSNSVNGTVKWFNEVKGFGFI-QQDSGPDVFAHFKEIASS----GFKTLYEGQRVSFGIV 55
Query: 329 AGEKGYEAARV 361
G+KG A +
Sbjct: 56 DGQKGPSAVNI 66
>UniRef50_Q8D046 Cluster: Cold shock protein; n=14;
Enterobacteriaceae|Rep: Cold shock protein - Yersinia
pestis
Length = 77
Score = 51.2 bits (117), Expect = 6e-06
Identities = 29/65 (44%), Positives = 38/65 (58%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G VKWFN GYGFI+ +D DV+V++TA I N K S+ +G+ VEF+ G
Sbjct: 14 GRVKWFNQSEGYGFISPHDGGSDVYVNKTA-IANTKNK---SLNEGQDVEFSTYRSIHGP 69
Query: 347 EAARV 361
AA V
Sbjct: 70 SAADV 74
>UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2;
Clostridium|Rep: Cold-shock protein, DNA-binding -
Clostridium phytofermentans ISDg
Length = 70
Score = 51.2 bits (117), Expect = 6e-06
Identities = 26/66 (39%), Positives = 40/66 (60%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GTVKW++ + GYGF++ ND + DVF+H + I K V +GE++ F ++ EKG
Sbjct: 5 TGTVKWYDSERGYGFVSTNDGR-DVFLHHSQIKEKGFDKEVH---EGESIGFDIIEQEKG 60
Query: 344 YEAARV 361
A V
Sbjct: 61 PAAINV 66
>UniRef50_UPI0000589074 Cluster: PREDICTED: similar to
ENSANGP00000011455; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000011455
- Strongylocentrotus purpuratus
Length = 234
Score = 50.8 bits (116), Expect = 8e-06
Identities = 29/71 (40%), Positives = 35/71 (49%)
Frame = +2
Query: 155 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAG 334
E G KWF++ YGF+ +D DVFVHQ I RS+ E VE+
Sbjct: 61 ELYRGKCKWFSLAKCYGFLTPDDGSGDVFVHQRVI----KMVGYRSLDTNEEVEYKFQFS 116
Query: 335 EKGYEAARVTG 367
EKG EA VTG
Sbjct: 117 EKGREATTVTG 127
>UniRef50_Q9I0L6 Cluster: Cold-shock protein CspD; n=12;
Gammaproteobacteria|Rep: Cold-shock protein CspD -
Pseudomonas aeruginosa
Length = 90
Score = 50.8 bits (116), Expect = 8e-06
Identities = 25/68 (36%), Positives = 36/68 (52%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
+SG VKWFN GYGFI ED+F H +AI +++ G+ V F ++ G K
Sbjct: 2 LSGKVKWFNNAKGYGFILAEGRDEDLFAHYSAI----QMDGYKTLKAGQPVNFEIIQGPK 57
Query: 341 GYEAARVT 364
G A ++
Sbjct: 58 GLHAINIS 65
>UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78;
Bacteria|Rep: Cold shock DNA binding protein -
Rhodopseudomonas palustris
Length = 84
Score = 50.8 bits (116), Expect = 8e-06
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
GTVKWFN GYGFI +D DVFVH +A+ R + ++ +G+ + + +VA +
Sbjct: 18 GTVKWFNATKGYGFIQPDDGGNDVFVHISAV----ERAGLGTLREGQKISYEIVADRR 71
>UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep:
AGR_C_161p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 163
Score = 50.8 bits (116), Expect = 8e-06
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
+GTVKWFN GYGFI +D +DVFVH +A+ R + ++ DG+ + + ++
Sbjct: 97 TGTVKWFNATKGYGFIQPDDGSQDVFVHISAV----ERAGLTALNDGQKLSYELM 147
>UniRef50_A6E2L2 Cluster: Cold-shock DNA-binding domain protein;
n=19; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Roseovarius sp. TM1035
Length = 68
Score = 50.8 bits (116), Expect = 8e-06
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GTVKWFN G+GFI ++ +DVFVH +A+ R + + D + V F + +G G
Sbjct: 3 NGTVKWFNSTKGFGFIAPDNGGKDVFVHISAV----ERAGLTGLADNQKVTFDIESGRDG 58
Query: 344 YEAA 355
E+A
Sbjct: 59 RESA 62
>UniRef50_A4A3Y7 Cluster: Cold-shock domain family protein; n=1;
Congregibacter litoralis KT71|Rep: Cold-shock domain
family protein - Congregibacter litoralis KT71
Length = 189
Score = 50.8 bits (116), Expect = 8e-06
Identities = 28/65 (43%), Positives = 39/65 (60%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVKWFN G+GFI R + +++FVH +II + RS+ DG V + VV +KG
Sbjct: 126 GTVKWFNGTKGFGFIIR-ENGDEIFVHHRSII----GEGRRSLRDGAPVRYRVVTTDKGP 180
Query: 347 EAARV 361
+A V
Sbjct: 181 QAEEV 185
>UniRef50_Q8G880 Cluster: Cold shock protein; n=3;
Bifidobacterium|Rep: Cold shock protein -
Bifidobacterium longum
Length = 79
Score = 50.4 bits (115), Expect = 1e-05
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVK+F K G+GFI +D EDVFVH I + + + +G+ VE+ + KG
Sbjct: 4 GTVKFFLAKKGFGFIQPDDGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPASSGKGT 63
Query: 347 EAARV 361
+A V
Sbjct: 64 QAKDV 68
>UniRef50_Q4F6X8 Cluster: Cold shock protein; n=6;
Gammaproteobacteria|Rep: Cold shock protein -
Pseudomonas fluorescens
Length = 69
Score = 50.4 bits (115), Expect = 1e-05
Identities = 26/71 (36%), Positives = 40/71 (56%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
++ + +GTVKWFN + G+GFI +D+FVH +S+ +G+ V F VV
Sbjct: 1 MSNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFPF-----QGTGFKSLQEGQKVSFVVV 55
Query: 329 AGEKGYEAARV 361
G+KG +A V
Sbjct: 56 NGQKGLQADEV 66
>UniRef50_A7DA86 Cluster: Putative cold-shock DNA-binding domain
protein; n=3; Methylobacterium extorquens PA1|Rep:
Putative cold-shock DNA-binding domain protein -
Methylobacterium extorquens PA1
Length = 69
Score = 50.4 bits (115), Expect = 1e-05
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK- 340
+GTVKWFN GYGFI ++ +DVFVH +A+ R +R + +G+ V + V K
Sbjct: 3 TGTVKWFNETKGYGFIQPDNGGKDVFVHISAV----ERAGLRDLAEGQKVTYEVEIDRKS 58
Query: 341 GYEAA 355
G E+A
Sbjct: 59 GKESA 63
>UniRef50_A5V9E9 Cluster: Putative cold-shock DNA-binding domain
protein; n=1; Sphingomonas wittichii RW1|Rep: Putative
cold-shock DNA-binding domain protein - Sphingomonas
wittichii RW1
Length = 198
Score = 50.0 bits (114), Expect = 1e-05
Identities = 26/70 (37%), Positives = 43/70 (61%)
Frame = +2
Query: 152 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 331
AE V G VKWF+ G+GFI + + DV VH +++R++ R R++ +G + VVA
Sbjct: 31 AETVVGAVKWFDATRGFGFIATDGDRGDVLVH-FSVLRDHGR---RTLPEGARIACEVVA 86
Query: 332 GEKGYEAARV 361
++G +A R+
Sbjct: 87 RDRGLQARRI 96
Score = 38.7 bits (86), Expect = 0.033
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 173 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIR 265
VKWFN GYGF+ R+ +D+F+H + R
Sbjct: 137 VKWFNRLKGYGFLVRDGETQDIFIHMETVRR 167
>UniRef50_A3J3Q2 Cluster: Cold shock protein; n=7;
Flavobacteriales|Rep: Cold shock protein - Flavobacteria
bacterium BAL38
Length = 66
Score = 50.0 bits (114), Expect = 1e-05
Identities = 26/66 (39%), Positives = 39/66 (59%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+G VK+FN GYGFI ++T +D+FVH + + V S+ +G+AV + G KG
Sbjct: 3 TGKVKFFNESKGYGFITDDETGKDIFVHASGM-------RVESLNEGDAVSYEEEEGRKG 55
Query: 344 YEAARV 361
AA+V
Sbjct: 56 KVAAQV 61
>UniRef50_Q9AN51 Cluster: ID534; n=52; Bacteria|Rep: ID534 -
Bradyrhizobium japonicum
Length = 120
Score = 49.6 bits (113), Expect = 2e-05
Identities = 25/63 (39%), Positives = 36/63 (57%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVKWFN GYGF+ +D +DVFVH +A+ + S+ +G V + +V G
Sbjct: 56 GTVKWFNPTKGYGFVAPDDGGKDVFVHISAV----EKAGYTSLVEGAKVGYELVTNRSGK 111
Query: 347 EAA 355
+AA
Sbjct: 112 QAA 114
>UniRef50_Q5JKD6 Cluster: Cold shock domain protein 2-like protein;
n=3; Oryza sativa|Rep: Cold shock domain protein 2-like
protein - Oryza sativa subsp. japonica (Rice)
Length = 221
Score = 49.6 bits (113), Expect = 2e-05
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
+++E+V G VK F+ +G+ FI +D ED+F+HQ+++ RS+ D + +E +V
Sbjct: 1 MVSERVKGMVKGFDATNGFSFITPDDGSEDLFIHQSSL----KFDGYRSLNDDDVIELSV 56
Query: 326 VAGEKG-YEAARVTGP 370
+ + G +A VT P
Sbjct: 57 GSSDDGRTKAVDVTAP 72
>UniRef50_Q28L70 Cluster: Cold-shock DNA-binding domain protein;
n=11; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Jannaschia sp. (strain CCS1)
Length = 68
Score = 49.2 bits (112), Expect = 2e-05
Identities = 25/64 (39%), Positives = 36/64 (56%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GTVKWFN G+GFI +DVFVH +A+ R + + D + V + + AG G
Sbjct: 3 NGTVKWFNSTKGFGFIAPETGGKDVFVHISAV----ERSGLTGLADNQKVTYDLEAGRDG 58
Query: 344 YEAA 355
E+A
Sbjct: 59 RESA 62
>UniRef50_Q0SKK0 Cluster: Cold shock protein; n=20; Bacteria|Rep:
Cold shock protein - Rhodococcus sp. (strain RHA1)
Length = 119
Score = 49.2 bits (112), Expect = 2e-05
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GTV+WFN + G+GF+ D +D+FVH + I + R + +G+ V FAV E G
Sbjct: 55 TGTVRWFNAEQGFGFLAPADGSDDIFVHVSEIAGDGH----RILEEGQRVSFAVCRTETG 110
Query: 344 YEAARV 361
+A V
Sbjct: 111 DQARDV 116
>UniRef50_A3YG84 Cluster: Cold-shock protein CspD; n=1; Marinomonas
sp. MED121|Rep: Cold-shock protein CspD - Marinomonas
sp. MED121
Length = 92
Score = 49.2 bits (112), Expect = 2e-05
Identities = 23/65 (35%), Positives = 38/65 (58%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVKWFN GYGFI +ED+F+H ++I+ + +++ G++V F G++G
Sbjct: 4 GTVKWFNNAKGYGFIVSESFEEDLFIHYSSILID----GYKTLKAGQSVSFKTSPGKQGL 59
Query: 347 EAARV 361
A +
Sbjct: 60 HAVDI 64
>UniRef50_Q8KES2 Cluster: Cold shock-like protein CspG; n=9;
Chlorobiaceae|Rep: Cold shock-like protein CspG -
Chlorobium tepidum
Length = 97
Score = 48.4 bits (110), Expect = 4e-05
Identities = 26/63 (41%), Positives = 36/63 (57%)
Frame = +2
Query: 173 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEA 352
VKWF+ K GYGFI D ED+FVH ++II + K + D VE+ + +KG +A
Sbjct: 6 VKWFDGKKGYGFILNPDGGEDIFVHFSSIISDQSFKVLNQDAD---VEYDLDKTQKGLQA 62
Query: 353 ARV 361
V
Sbjct: 63 KNV 65
>UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 70
Score = 48.4 bits (110), Expect = 4e-05
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPR 277
+GTVKWFNV+ G+GFI +D D FVH +A+ R++ R
Sbjct: 3 TGTVKWFNVQKGFGFIAPDDGGSDAFVHISAVERSSDR 40
>UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein;
n=1; Ostreococcus tauri|Rep: Putative nucleic acid
binding protein - Ostreococcus tauri
Length = 125
Score = 48.4 bits (110), Expect = 4e-05
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK--AVRSVGDGEAVEFAV 325
G VKWFN G+G+I +D + DVFVHQ+A+ R+ R G++VEF V
Sbjct: 13 GKVKWFNCTKGFGYITPDDGEPDVFVHQSALKMEGFRRTDGRRFATQGDSVEFDV 67
>UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1;
Ostreococcus tauri|Rep: Glycogen debranching enzyme -
Ostreococcus tauri
Length = 141
Score = 48.4 bits (110), Expect = 4e-05
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +2
Query: 173 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKA--VRSVGDGEAVEFAVVAGEKGY 346
V WFN GYG++ +D EDVFVHQ+ + + R VR G+ +EF + E+
Sbjct: 44 VTWFNCVRGYGYVRPHDGSEDVFVHQSELQMDGFRSVWEVRLQQAGDEIEFELDDDER-R 102
Query: 347 EAARVTGP 370
A VTGP
Sbjct: 103 RAKNVTGP 110
>UniRef50_Q11D48 Cluster: Cold-shock DNA-binding domain protein;
n=11; Proteobacteria|Rep: Cold-shock DNA-binding domain
protein - Mesorhizobium sp. (strain BNC1)
Length = 69
Score = 48.0 bits (109), Expect = 5e-05
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVK+FN G+GFI +D DVFVH +A+ R +R++ +G+ + F VV +
Sbjct: 4 GTVKFFNATKGFGFIQPDDGAADVFVHISAV----ERAGMRTIVEGQKLSFDVVRDNRSG 59
Query: 347 EAA 355
++A
Sbjct: 60 KSA 62
>UniRef50_Q0I3L0 Cluster: Cold shock-like protein; n=2;
Proteobacteria|Rep: Cold shock-like protein -
Haemophilus somnus (strain 129Pt) (Histophilus somni
(strain 129Pt))
Length = 69
Score = 48.0 bits (109), Expect = 5e-05
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G VKWFN G+GF++ + DVF H + I + RS+ G+ V+ VV G+KG
Sbjct: 4 GIVKWFNNAKGFGFLSVESSDVDVFAHYSVI----EMEGYRSLKAGQKVQCEVVHGDKGS 59
Query: 347 EAARV 361
A ++
Sbjct: 60 HATKI 64
>UniRef50_P0A353 Cluster: Cold shock-like protein cspA; n=288;
Bacteria|Rep: Cold shock-like protein cspA - Bordetella
bronchiseptica (Alcaligenes bronchisepticus)
Length = 67
Score = 48.0 bits (109), Expect = 5e-05
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+G VKWFN + GYGFI +D+F H + I N +S+ + + V F G KG
Sbjct: 3 TGVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQAN----GFKSLEENQRVSFVTAMGPKG 58
Query: 344 YEAARV 361
+A ++
Sbjct: 59 PQATKI 64
>UniRef50_Q82ZV8 Cluster: Cold-shock domain family protein; n=7;
cellular organisms|Rep: Cold-shock domain family protein
- Enterococcus faecalis (Streptococcus faecalis)
Length = 67
Score = 47.6 bits (108), Expect = 7e-05
Identities = 30/67 (44%), Positives = 37/67 (55%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GTVK FN K GYGFI D E +FVHQT I RK + +G+AVE+ E
Sbjct: 3 TGTVKSFNHKRGYGFIIAEDGSE-IFVHQTGICMPGFRKLL----EGQAVEYETAEYEGR 57
Query: 344 YEAARVT 364
+A VT
Sbjct: 58 TKAVNVT 64
>UniRef50_Q1B3F5 Cluster: Cold-shock DNA-binding domain protein;
n=13; Actinomycetales|Rep: Cold-shock DNA-binding domain
protein - Mycobacterium sp. (strain MCS)
Length = 147
Score = 47.6 bits (108), Expect = 7e-05
Identities = 24/67 (35%), Positives = 40/67 (59%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+G VKW++ + G+GF+++ D EDV+V +A+ V + G+ VEF V AG +G
Sbjct: 14 TGRVKWYDAEKGFGFLSQED-GEDVYVRSSAL-----PAGVEGLKAGQRVEFGVAAGRRG 67
Query: 344 YEAARVT 364
+A +T
Sbjct: 68 PQALSLT 74
>UniRef50_P46449 Cluster: Cold shock-like protein cspD; n=31;
Bacteria|Rep: Cold shock-like protein cspD - Haemophilus
influenzae
Length = 72
Score = 47.6 bits (108), Expect = 7e-05
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G VKWFN G+GFI+ D+F H + I RS+ G+ V+F V+ +KG
Sbjct: 4 GIVKWFNNAKGFGFISAEGVDADIFAHYSVI----EMDGYRSLKAGQKVQFEVLHSDKGS 59
Query: 347 EAARV 361
A ++
Sbjct: 60 HATKI 64
>UniRef50_Q7NNC3 Cluster: Gsr0488 protein; n=1; Gloeobacter
violaceus|Rep: Gsr0488 protein - Gloeobacter violaceus
Length = 65
Score = 47.2 bits (107), Expect = 1e-04
Identities = 25/63 (39%), Positives = 37/63 (58%)
Frame = +2
Query: 173 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEA 352
V+WF++++GYG I R+DT E+VF+ TAI P + R++ AV F + G G A
Sbjct: 2 VRWFDLQAGYGAIARDDTGEEVFLLFTAI----PGEGYRTIAPSTAVHFELAQGPSGPVA 57
Query: 353 ARV 361
V
Sbjct: 58 RNV 60
>UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2;
Actinomycetales|Rep: Putative DNA-binding protein -
Streptomyces coelicolor
Length = 162
Score = 46.8 bits (106), Expect = 1e-04
Identities = 29/70 (41%), Positives = 41/70 (58%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
V+G V F+ GYGFI D EDVF+H ++ P ++VRS G VEF V +GE+
Sbjct: 22 VAGRVVRFDGTRGYGFIAPEDGGEDVFLHVNDLL--IPEESVRS---GLVVEFEVESGER 76
Query: 341 GYEAARVTGP 370
G +A+ + P
Sbjct: 77 GLKASGIRLP 86
>UniRef50_Q89E28 Cluster: Cold shock protein; n=8; cellular
organisms|Rep: Cold shock protein - Bradyrhizobium
japonicum
Length = 67
Score = 46.8 bits (106), Expect = 1e-04
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 331
GTVKWFN GYGFI +DVFVH +A+ + + ++ +G+ VE+ +A
Sbjct: 5 GTVKWFNPTKGYGFIQPASGGKDVFVHISAV----QKAGLSTLNEGQTVEYEEIA 55
>UniRef50_Q2S3Y3 Cluster: 'Cold-shock' DNA-binding domain, putative;
n=1; Salinibacter ruber DSM 13855|Rep: 'Cold-shock'
DNA-binding domain, putative - Salinibacter ruber
(strain DSM 13855)
Length = 69
Score = 46.8 bits (106), Expect = 1e-04
Identities = 22/66 (33%), Positives = 39/66 (59%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GTVKWF+ GYGF+ ++ ++DVF+H + + P + + +G+ +EF + EKG
Sbjct: 3 TGTVKWFSPAEGYGFVEPDNGEDDVFLHHSEV----PDE---DLEEGDRLEFEIEETEKG 55
Query: 344 YEAARV 361
A +
Sbjct: 56 LNAVNI 61
>UniRef50_Q28PH1 Cluster: Cold-shock DNA-binding domain protein;
n=6; Rhodobacterales|Rep: Cold-shock DNA-binding domain
protein - Jannaschia sp. (strain CCS1)
Length = 181
Score = 46.8 bits (106), Expect = 1e-04
Identities = 28/67 (41%), Positives = 35/67 (52%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
V+ VKWF+ G+GF N EDVFVH ++R R + GEAV VV G +
Sbjct: 113 VAARVKWFDKAKGFGFANVFGHSEDVFVH-VEVLR---RSGFTELQPGEAVAMKVVDGPR 168
Query: 341 GYEAARV 361
G AA V
Sbjct: 169 GRMAAEV 175
Score = 38.3 bits (85), Expect = 0.044
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
I V+G VKWF+ G+GF+ ++ D+ +H ++R+ R S+ +G V
Sbjct: 18 ICPTVAGVVKWFDTTKGFGFVLSDEGGPDILLHAN-VLRSFGR---GSIAEGARVMLRTQ 73
Query: 329 AGEKGYEAARV 361
A +G +A +
Sbjct: 74 ATGRGLQAVEI 84
>UniRef50_A4U251 Cluster: Cold shock DNA-binding domain protein;
n=3; Magnetospirillum|Rep: Cold shock DNA-binding domain
protein - Magnetospirillum gryphiswaldense
Length = 209
Score = 46.8 bits (106), Expect = 1e-04
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = +2
Query: 152 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 331
+E V G VK+F+ + G+GF+ + +DVFVH A+ R ++++ G+ V
Sbjct: 141 SETVEGVVKFFSAEKGFGFVQTDQGGKDVFVHIKAL----ERSGIKALETGQRVRCTTTQ 196
Query: 332 GEKGYEAARV 361
G+KG +A V
Sbjct: 197 GQKGPQADTV 206
Score = 42.3 bits (95), Expect = 0.003
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
V V+ TVKWFN G+GF+ +D D F+H +A+ R + V +G + +
Sbjct: 47 VTQTNVTATVKWFNASKGFGFVAPSDGTPDAFLHISAL----ERAGLTQVAEGTTLVVDL 102
Query: 326 VAGEKG 343
G +G
Sbjct: 103 GQGNRG 108
>UniRef50_P0A971 Cluster: Cold shock-like protein cspD; n=12;
Gammaproteobacteria|Rep: Cold shock-like protein cspD -
Shigella flexneri
Length = 74
Score = 46.8 bits (106), Expect = 1e-04
Identities = 25/63 (39%), Positives = 34/63 (53%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVKWFN G+GFI ED+F H + I R++ G++V+F V G KG
Sbjct: 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTI----QMDGYRTLKAGQSVQFDVHQGPKGN 59
Query: 347 EAA 355
A+
Sbjct: 60 HAS 62
>UniRef50_Q7VLQ6 Cluster: Cold shock-like protein CspD; n=6;
Proteobacteria|Rep: Cold shock-like protein CspD -
Haemophilus ducreyi
Length = 68
Score = 46.4 bits (105), Expect = 2e-04
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G VKWFN G+GFI + + D+F H + I + RS+ G+ V+F +V E+G
Sbjct: 4 GIVKWFNNVKGFGFITCDTVEGDIFAHFSEI----KQDGYRSLKVGQKVQFELVTNERGA 59
Query: 347 EAARVT 364
A ++
Sbjct: 60 SATHIS 65
>UniRef50_Q6YPQ4 Cluster: Cold shock protein; n=3; Firmicutes|Rep:
Cold shock protein - Onion yellows phytoplasma
Length = 74
Score = 46.4 bits (105), Expect = 2e-04
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = +2
Query: 155 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAG 334
+K GT +WF+ GYGFI D K D+FVH ++I +++ + + VEF V G
Sbjct: 4 KKQQGTCRWFSKDKGYGFIVSVDGK-DIFVHYSSI--QTEVFGRKTLNENDKVEFTVKEG 60
Query: 335 EKGYEAARV 361
++G +A V
Sbjct: 61 DRGAQAVDV 69
>UniRef50_Q5ZWM5 Cluster: Cold shock domain family protein; n=6;
Bacteria|Rep: Cold shock domain family protein -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 87
Score = 46.4 bits (105), Expect = 2e-04
Identities = 26/71 (36%), Positives = 39/71 (54%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
+ K+ G VKWFN G+GFI + +D FVH ++I N +++ DG V F +
Sbjct: 15 MTNKIRGKVKWFNKDKGFGFI--ESSGKDYFVHFSSIQSN----GFKTLPDGATVLFKMG 68
Query: 329 AGEKGYEAARV 361
G+KG +A V
Sbjct: 69 KGQKGPQAEEV 79
>UniRef50_Q5FNZ7 Cluster: Cold shock protein; n=1; Gluconobacter
oxydans|Rep: Cold shock protein - Gluconobacter oxydans
(Gluconobacter suboxydans)
Length = 96
Score = 46.4 bits (105), Expect = 2e-04
Identities = 22/64 (34%), Positives = 36/64 (56%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GTVKWFN G+GFI ++ +D FVH I R + ++ +G+ V + + +G G
Sbjct: 31 TGTVKWFNSTKGFGFIQPDNGGQDAFVH----ISELERAGMHTLNEGQHVSYELESGRNG 86
Query: 344 YEAA 355
+A
Sbjct: 87 KTSA 90
>UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6;
cellular organisms|Rep: Cold-shock protein, DNA-binding
- Enterococcus faecium DO
Length = 35
Score = 46.4 bits (105), Expect = 2e-04
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIR 265
+GTVKWFN + G+GFI+R D DVFVH +AI R
Sbjct: 3 NGTVKWFNAEKGFGFISRED-GSDVFVHFSAIPR 35
>UniRef50_Q982F0 Cluster: Cold-shock protein; n=3; Mesorhizobium
loti|Rep: Cold-shock protein - Rhizobium loti
(Mesorhizobium loti)
Length = 97
Score = 46.0 bits (104), Expect = 2e-04
Identities = 22/65 (33%), Positives = 39/65 (60%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVKW+ + G+GFI ++ ++DVFVH + + R+ + ++ +G+ V A G+KG
Sbjct: 33 GTVKWYKPEKGFGFIAPDNGEKDVFVHASTLTRS----GLSALVEGQKVFVACGQGKKGL 88
Query: 347 EAARV 361
E +
Sbjct: 89 EVRSI 93
>UniRef50_Q8YIC6 Cluster: COLD SHOCK PROTEIN CSPA; n=4;
Brucella|Rep: COLD SHOCK PROTEIN CSPA - Brucella
melitensis
Length = 101
Score = 46.0 bits (104), Expect = 2e-04
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
+GTVKWFN G+GFI + DVFVH +A+ R + ++ +G+ V + +V
Sbjct: 35 TGTVKWFNTTKGFGFIQPDQGGTDVFVHISAV----QRAGLTTLDEGQKVSYEIV 85
>UniRef50_Q03YA9 Cluster: Cold shock protein; n=1; Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293|Rep: Cold
shock protein - Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 /NCDO 523)
Length = 74
Score = 46.0 bits (104), Expect = 2e-04
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GTVK + + GYG+I ++ +DVFVH I +S+ GE V + +V G K
Sbjct: 3 TGTVKIWQKERGYGYITPDEGGDDVFVHFNGI----DMDGFKSLIQGEKVAYVLVQGYKS 58
Query: 344 YEAARV 361
Y+AA+V
Sbjct: 59 YQAAQV 64
>UniRef50_Q6N6T9 Cluster: Cold shock DNA binding protein; n=38;
Alphaproteobacteria|Rep: Cold shock DNA binding protein
- Rhodopseudomonas palustris
Length = 235
Score = 45.6 bits (103), Expect = 3e-04
Identities = 22/68 (32%), Positives = 37/68 (54%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
++SG +KWF+ GYGF+ ++ DV +H T + R+ + A +G + V
Sbjct: 68 EISGVIKWFDASKGYGFVVPDNGWPDVLLHVTVLRRDGYQTAY----EGARIVVECVQRA 123
Query: 338 KGYEAARV 361
KGY+A R+
Sbjct: 124 KGYQAFRI 131
Score = 35.9 bits (79), Expect = 0.24
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 173 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEA 352
VKWFN G+GF+ + D+FVH + R + + G+ V G KG A
Sbjct: 165 VKWFNRLRGFGFLTCGEGTPDIFVHMETL----RRYGMTELRPGQYVLVRFGPGSKGMMA 220
Query: 353 ARV 361
A +
Sbjct: 221 AEI 223
>UniRef50_Q1AWL7 Cluster: Cold-shock DNA-binding domain protein;
n=3; Bacteria|Rep: Cold-shock DNA-binding domain protein
- Rubrobacter xylanophilus (strain DSM 9941 / NBRC
16129)
Length = 197
Score = 45.6 bits (103), Expect = 3e-04
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = +2
Query: 152 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 331
+++ G VKWF+ + GYGF+ R ED+FVH + + S+G G VE+ V
Sbjct: 131 SQREQGRVKWFDPEKGYGFLVR-PGGEDLFVHHSEV-----EGDASSLGQGVEVEYEVGR 184
Query: 332 GEKGYEAARV 361
E+G A RV
Sbjct: 185 NERGPNARRV 194
>UniRef50_UPI000155640A Cluster: PREDICTED: hypothetical protein;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein - Ornithorhynchus anatinus
Length = 502
Score = 45.2 bits (102), Expect = 4e-04
Identities = 18/24 (75%), Positives = 22/24 (91%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINR 217
V+A +V GTVKWFNV++GYGFINR
Sbjct: 56 VLATQVLGTVKWFNVRNGYGFINR 79
>UniRef50_A3UBK6 Cluster: Cold-shock DNA-binding domain protein;
n=8; Bacteroidetes|Rep: Cold-shock DNA-binding domain
protein - Croceibacter atlanticus HTCC2559
Length = 64
Score = 45.2 bits (102), Expect = 4e-04
Identities = 25/66 (37%), Positives = 34/66 (51%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GTVK+FN G+GFI T E+ FVH T +I + + + VEF + G KG
Sbjct: 3 TGTVKFFNDTKGFGFIKEEGTNEEHFVHVTGLI--------DEIREDDRVEFELKQGNKG 54
Query: 344 YEAARV 361
A V
Sbjct: 55 MNAVNV 60
>UniRef50_A0Z255 Cluster: Cold shock protein, CspA family-like
protein; n=1; marine gamma proteobacterium HTCC2080|Rep:
Cold shock protein, CspA family-like protein - marine
gamma proteobacterium HTCC2080
Length = 138
Score = 45.2 bits (102), Expect = 4e-04
Identities = 26/65 (40%), Positives = 36/65 (55%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G +KWFN G+GFI +D E VFVH RN RS+ G+ V ++V A ++G
Sbjct: 76 GNIKWFNATKGFGFIVGDDGAE-VFVH----YRNVEGLTKRSIKQGQRVAYSVRASDRGP 130
Query: 347 EAARV 361
+A V
Sbjct: 131 QAEGV 135
>UniRef50_A0YBV1 Cluster: CspA-like protein; n=17;
Proteobacteria|Rep: CspA-like protein - marine gamma
proteobacterium HTCC2143
Length = 91
Score = 44.8 bits (101), Expect = 5e-04
Identities = 24/66 (36%), Positives = 33/66 (50%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GTVKWFN G+GFI DVF H + I + +++ G+ V F V G KG
Sbjct: 3 TGTVKWFNNAKGFGFILPEGGGADVFAHYSTISMD----GYKTLKAGQPVSFDTVNGPKG 58
Query: 344 YEAARV 361
A +
Sbjct: 59 LHATNI 64
>UniRef50_Q48H64 Cluster: Cold shock domain protein CspD; n=7;
Proteobacteria|Rep: Cold shock domain protein CspD -
Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6)
Length = 94
Score = 44.0 bits (99), Expect = 9e-04
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRN-DTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
++G VKWFN GYGFI ++ +D+F H + I + +++ G+ V F ++ G
Sbjct: 4 LNGKVKWFNNAKGYGFIIKDGKPDDDLFAHFSTI----QMEGYKTLKAGQPVSFEIIQGP 59
Query: 338 KGYEAARV 361
KG A +
Sbjct: 60 KGLHAVNI 67
>UniRef50_O33052 Cluster: Small cold-shock protein; n=7;
Corynebacterineae|Rep: Small cold-shock protein -
Mycobacterium leprae
Length = 136
Score = 44.0 bits (99), Expect = 9e-04
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+G VKW++ G+GF+++ D EDV+V +A+ V + G+ VEF V +G +G
Sbjct: 3 TGKVKWYDADKGFGFLSQED-GEDVYVRSSAL-----PAGVEGLKAGQRVEFGVASGRRG 56
Query: 344 YEA 352
+A
Sbjct: 57 PQA 59
>UniRef50_Q0APJ7 Cluster: Cold-shock DNA-binding domain protein;
n=1; Maricaulis maris MCS10|Rep: Cold-shock DNA-binding
domain protein - Maricaulis maris (strain MCS10)
Length = 174
Score = 44.0 bits (99), Expect = 9e-04
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +2
Query: 173 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEA 352
VKWF+ GYGF+ ++ + DVF+H A +R R + G+ +E V G KG A
Sbjct: 110 VKWFDALRGYGFVTCDNVEGDVFLH-AATLR---RAGFEDIQPGDRIEVRCVEGPKGALA 165
Query: 353 ARV 361
A +
Sbjct: 166 AEI 168
Score = 38.7 bits (86), Expect = 0.033
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
++ G VKW++ GYGFI+ +D + D+ +H + + R A+ + + V G+
Sbjct: 15 ELEGRVKWYDPARGYGFIDASDGEGDILLHASCLRRFGQGPALPNA----KIVCKAVQGD 70
Query: 338 KGYEAARV 361
KG +A +
Sbjct: 71 KGRQAVEL 78
>UniRef50_Q1VQ89 Cluster: Cold shock protein; n=8;
Bacteroidetes|Rep: Cold shock protein - Psychroflexus
torquis ATCC 700755
Length = 63
Score = 43.6 bits (98), Expect = 0.001
Identities = 24/65 (36%), Positives = 33/65 (50%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVK+FN G+GFI +D FVH + +I + +G+ VEF + G KG
Sbjct: 4 GTVKFFNDTKGFGFITEEGVDKDHFVHASGLI--------DEIREGDEVEFDLQEGNKGL 55
Query: 347 EAARV 361
A V
Sbjct: 56 NAVNV 60
>UniRef50_A4EHC3 Cluster: Cold shock protein; n=1; Roseobacter sp.
CCS2|Rep: Cold shock protein - Roseobacter sp. CCS2
Length = 151
Score = 43.6 bits (98), Expect = 0.001
Identities = 24/65 (36%), Positives = 35/65 (53%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
V+ E++ VKWF+ GYGF+N ED+FV A +R + ++S GD V+ A
Sbjct: 80 VLEERIPVRVKWFDPSKGYGFVNAFGCAEDIFV-GAATLRKSMLGDLQS-GDALCVQIAE 137
Query: 326 VAGEK 340
G K
Sbjct: 138 TEGRK 142
Score = 37.5 bits (83), Expect = 0.077
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +2
Query: 173 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEA 352
+KWF+ G+GF+ + + D +HQ I+ R S+ +G +VEFA + E G++
Sbjct: 1 MKWFDAYRGFGFVVIDGIETDFLLHQN-ILHGFGR---TSIAEGSSVEFAYQSTENGFKI 56
Query: 353 ARV 361
+
Sbjct: 57 IEI 59
>UniRef50_Q5NP11 Cluster: Cold shock protein; n=1; Zymomonas
mobilis|Rep: Cold shock protein - Zymomonas mobilis
Length = 174
Score = 43.2 bits (97), Expect = 0.002
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +2
Query: 170 TVKWFNVKSGYGFINRNDTKEDVFVHQTA 256
TVKWFN GYGF+ RN ++D+FVH A
Sbjct: 108 TVKWFNRTKGYGFLIRNADQQDIFVHAEA 136
Score = 32.3 bits (70), Expect = 2.9
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVH 247
++G VKWF++ G+GF+ + + D+ +H
Sbjct: 13 ITGYVKWFDIIKGFGFLIGSKGEGDILIH 41
>UniRef50_A7HXE8 Cluster: Putative cold-shock DNA-binding domain
protein; n=1; Parvibaculum lavamentivorans DS-1|Rep:
Putative cold-shock DNA-binding domain protein -
Parvibaculum lavamentivorans DS-1
Length = 199
Score = 43.2 bits (97), Expect = 0.002
Identities = 22/71 (30%), Positives = 38/71 (53%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
++ +++G VKWF+ GYGFI + +DV VH + + + + ++ +G V V
Sbjct: 34 VSFEITGVVKWFDAVKGYGFIIPENGGDDVLVHLSCL----KQAGLEALDEGTTVTCEAV 89
Query: 329 AGEKGYEAARV 361
KG +A RV
Sbjct: 90 RRPKGAQAIRV 100
Score = 42.7 bits (96), Expect = 0.002
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +2
Query: 173 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEA 352
VKWFN GYGF+ R + D+F+H + R +R + G+ + G KG
Sbjct: 138 VKWFNRARGYGFVTRGEGTPDIFIHMETL----RRYGIRDLLPGQQINVRFGEGPKGLMV 193
Query: 353 ARV 361
A +
Sbjct: 194 AEI 196
>UniRef50_A2TNS0 Cluster: Cold shock protein; n=4;
Bacteroidetes|Rep: Cold shock protein - Dokdonia
donghaensis MED134
Length = 82
Score = 43.2 bits (97), Expect = 0.002
Identities = 25/65 (38%), Positives = 35/65 (53%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G VK+FN K G+GFI +++ E+VFVH T + + + + V F V GEKG
Sbjct: 21 GKVKFFNTKKGFGFIAIDNSDEEVFVHTTNV--------TGRLRENDKVTFEVEDGEKGP 72
Query: 347 EAARV 361
A V
Sbjct: 73 SAVNV 77
>UniRef50_Q1GHI4 Cluster: Cold-shock DNA-binding domain protein;
n=19; Rhodobacterales|Rep: Cold-shock DNA-binding domain
protein - Silicibacter sp. (strain TM1040)
Length = 179
Score = 42.7 bits (96), Expect = 0.002
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = +2
Query: 155 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAG 334
+ V G VKWF+ GYGFI D D+ +H ++RN + SV DG +E
Sbjct: 9 QHVRGLVKWFDPAKGYGFIVCPDDGPDILLH-VNVLRNFGQS---SVADGAGIEVVTHRT 64
Query: 335 EKGYEAARV 361
++G +A +
Sbjct: 65 DRGVQAVEI 73
Score = 41.9 bits (94), Expect = 0.004
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +2
Query: 173 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEA 352
VKWF+ G+GF N EDVF+H ++R + V+S GEA+ V+ G++G A
Sbjct: 108 VKWFDKAKGFGFANVFGRDEDVFLH-VEVLRQSGLSDVQS---GEALAMRVIDGKRGRMA 163
Query: 353 ARV 361
V
Sbjct: 164 VDV 166
>UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=6;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - alpha proteobacterium HTCC2255
Length = 531
Score = 42.7 bits (96), Expect = 0.002
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
++GTV W+N G GFIN + +DVFVH +A+ ++ V +G+ + + ++ EK
Sbjct: 2 LTGTVIWYNPVKGLGFINPDQGGDDVFVHMSAL----KASGLKVVKEGDMLTYELLLDEK 57
Query: 341 -GYEAA 355
G +AA
Sbjct: 58 TGKKAA 63
>UniRef50_Q2RNN9 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 210
Score = 42.3 bits (95), Expect = 0.003
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+ TVKWFN G+GF+ +D + D F+H + + R + +G + + G+KG
Sbjct: 6 TATVKWFNATKGFGFVRVSDGEPDAFLHISVL----QRAGYSELPEGATIVCDLAPGQKG 61
Query: 344 YEAARV 361
+ + +
Sbjct: 62 MQVSEI 67
>UniRef50_Q0YRJ0 Cluster: Cold-shock protein, DNA-binding; n=1;
Chlorobium ferrooxidans DSM 13031|Rep: Cold-shock
protein, DNA-binding - Chlorobium ferrooxidans DSM 13031
Length = 70
Score = 42.3 bits (95), Expect = 0.003
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAII 262
V+G VKWF+V+ G+GFI + ED+FVH + I+
Sbjct: 2 VNGKVKWFDVRKGFGFILNPNGGEDIFVHFSNIV 35
>UniRef50_Q0C0S6 Cluster: Cold shock DNA-binding protein; n=1;
Hyphomonas neptunium ATCC 15444|Rep: Cold shock
DNA-binding protein - Hyphomonas neptunium (strain ATCC
15444)
Length = 175
Score = 42.3 bits (95), Expect = 0.003
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 170 TVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKA-VRSVGDGEAVEFAVVAGEKG 343
T+KWFN GYGF+ R+ + D+FVH A RKA + G ++ + G KG
Sbjct: 112 TLKWFNRTRGYGFVLRDGQETDIFVHAVAF-----RKAGYEDIEPGTRIDVIIEVGAKG 165
Score = 31.9 bits (69), Expect = 3.8
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +2
Query: 152 AEKVSGTVKWFNVKSGYGFINRNDTKE-----DVFVHQTAIIRNNPRKAVRSVGDGEAVE 316
A +V G +KWF+ GYGFI + E DV +H + + A +G +
Sbjct: 18 AVRVIGRIKWFDSAKGYGFIVAESSSEADMTGDVLLHISCLRDYGENYA----DEGAKIV 73
Query: 317 FAVVAGEKGYEAARV 361
V E+G++ A +
Sbjct: 74 CDAVRKERGWQTAHI 88
>UniRef50_A3VSH0 Cluster: Cold shock protein; n=1; Parvularcula
bermudensis HTCC2503|Rep: Cold shock protein -
Parvularcula bermudensis HTCC2503
Length = 173
Score = 42.3 bits (95), Expect = 0.003
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +2
Query: 170 TVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYE 349
TVKWF+ GYGF+ + ED+FVH ++R + + G+ + + G KG
Sbjct: 108 TVKWFSRAKGYGFLTATNANEDIFVHM-EVVR---AAGLSELQPGQRLRASYGRGTKGLL 163
Query: 350 AARVTGP 370
AA + P
Sbjct: 164 AAAIEPP 170
Score = 41.9 bits (94), Expect = 0.004
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +2
Query: 152 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 331
+ ++ G VKWF+ GYGFI DV +H + + ++ A +G V +
Sbjct: 11 SREIRGFVKWFDQTKGYGFITDEAGGRDVLIHSSCLKQSGRATA----PEGAIVTCEAIE 66
Query: 332 GEKGYEAARV 361
EKG +A R+
Sbjct: 67 SEKGLQATRI 76
>UniRef50_Q9HSS3 Cluster: Cold shock protein; n=7;
Halobacteriaceae|Rep: Cold shock protein - Halobacterium
salinarium (Halobacterium halobium)
Length = 74
Score = 42.3 bits (95), Expect = 0.003
Identities = 24/67 (35%), Positives = 33/67 (49%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+G V +FN GYGFI D EDVF H + P + +G+ VEF + +KG
Sbjct: 13 TGEVDFFNDTGGYGFIETEDADEDVFFHMEDV--GGP-----DLEEGQEVEFDIEQADKG 65
Query: 344 YEAARVT 364
A +T
Sbjct: 66 PRATNLT 72
>UniRef50_Q1AY27 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rubrobacter xylanophilus DSM 9941|Rep: Cold-shock
DNA-binding domain protein - Rubrobacter xylanophilus
(strain DSM 9941 / NBRC 16129)
Length = 69
Score = 41.9 bits (94), Expect = 0.004
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G VKWF+ + G+GFI ++ E+V VH T I + R++ +G VE+A V E G
Sbjct: 4 GRVKWFSGEKGFGFI-ETESGEEVLVHYTEI----KGEGFRALEEGAEVEYAAVKTEDGR 58
Query: 347 EAA 355
A
Sbjct: 59 RRA 61
>UniRef50_Q0M3I1 Cluster: Cold-shock protein, DNA-binding; n=1;
Caulobacter sp. K31|Rep: Cold-shock protein, DNA-binding
- Caulobacter sp. K31
Length = 201
Score = 41.9 bits (94), Expect = 0.004
Identities = 23/64 (35%), Positives = 30/64 (46%)
Frame = +2
Query: 173 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEA 352
VKWFN GYGF+ R+ D+FVH I R + + G+ V G KG
Sbjct: 138 VKWFNRTKGYGFVVRDGQPGDIFVH----IETLRRGGLEDLQPGDDVMVRFAEGPKGLVV 193
Query: 353 ARVT 364
A +T
Sbjct: 194 AEIT 197
Score = 39.9 bits (89), Expect = 0.014
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKE----DVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
++SG VKWF+ GYGFI +D + DV +H T+ +RN R+ +G + V
Sbjct: 17 RISGRVKWFDTGKGYGFIVPDDPGQTGLKDVLLHVTS-LRNCGRETAL---EGAVIVCDV 72
Query: 326 VAGEKGYEAARV 361
V KG++ + V
Sbjct: 73 VKRPKGWQVSEV 84
>UniRef50_A2U2L8 Cluster: Cold shock protein; n=3;
Bacteroidetes|Rep: Cold shock protein - Polaribacter
dokdonensis MED152
Length = 76
Score = 41.9 bits (94), Expect = 0.004
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVK+FN G+GFI T ++ FVH + + V + + + VEF + G KG
Sbjct: 17 GTVKFFNESKGFGFITEEGTNKEHFVHVSGL--------VDEIRENDEVEFDLQDGRKGL 68
Query: 347 EAARV 361
A V
Sbjct: 69 NAVNV 73
>UniRef50_Q9ZCP9 Cluster: Cold shock-like protein cspA; n=12;
Bacteria|Rep: Cold shock-like protein cspA - Rickettsia
prowazekii
Length = 70
Score = 41.9 bits (94), Expect = 0.004
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
+A + G VKW+N +GFI +++ +DVFVH++AI + S+ +G+ V F +
Sbjct: 1 MATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAI----DAAGLHSLEEGQEVIFDI 55
>UniRef50_Q5GRS9 Cluster: Cold shock protein; n=3; Wolbachia|Rep:
Cold shock protein - Wolbachia sp. subsp. Brugia malayi
(strain TRS)
Length = 84
Score = 41.5 bits (93), Expect = 0.005
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPR 277
G +KWFN + GYGFI D+FVH + + R+ R
Sbjct: 4 GNIKWFNAEKGYGFIKPEANGNDIFVHISTLERSGIR 40
>UniRef50_P0A985 Cluster: Cold shock-like protein cspH; n=24;
Enterobacteriaceae|Rep: Cold shock-like protein cspH -
Shigella flexneri
Length = 70
Score = 41.5 bits (93), Expect = 0.005
Identities = 29/71 (40%), Positives = 41/71 (57%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
++ K++G VK F+ KSG GFI +D +++V VH +A PR A + G VEF V
Sbjct: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAF---TPRDAEVLI-PGLRVEFCRV 56
Query: 329 AGEKGYEAARV 361
G +G AA V
Sbjct: 57 NGLRGPTAANV 67
>UniRef50_Q4AG52 Cluster: Cold-shock protein, DNA-binding; n=3;
Bacteroidetes/Chlorobi group|Rep: Cold-shock protein,
DNA-binding - Chlorobium phaeobacteroides BS1
Length = 149
Score = 41.1 bits (92), Expect = 0.006
Identities = 26/66 (39%), Positives = 33/66 (50%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+G V +FN G+GFI +T+E VFVH NN + + D V F V G KG
Sbjct: 88 NGVVTFFNETKGFGFIRDLETQESVFVHV-----NN---LIEPIKDNNMVSFEVEMGPKG 139
Query: 344 YEAARV 361
A RV
Sbjct: 140 PSAFRV 145
>UniRef50_Q8I248 Cluster: Cold-shock protein, putative; n=3;
Plasmodium|Rep: Cold-shock protein, putative -
Plasmodium falciparum (isolate 3D7)
Length = 150
Score = 41.1 bits (92), Expect = 0.006
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +2
Query: 155 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRN 268
+K++G V F+ + GYGFI ND D+FVH T I ++
Sbjct: 28 DKITGNVIMFDKRKGYGFIKPNDGGPDIFVHYTDICQS 65
>UniRef50_Q1GT29 Cluster: Cold-shock DNA-binding domain protein;
n=1; Sphingopyxis alaskensis|Rep: Cold-shock DNA-binding
domain protein - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 90
Score = 40.7 bits (91), Expect = 0.008
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 259
GTVK+FN GYGFI D D FVH TA+
Sbjct: 26 GTVKFFNNDKGYGFIENEDGSGDSFVHITAV 56
>UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus obeum ATCC 29174|Rep: Putative
uncharacterized protein - Ruminococcus obeum ATCC 29174
Length = 75
Score = 40.3 bits (90), Expect = 0.011
Identities = 25/74 (33%), Positives = 35/74 (47%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
++E + GTVKWF+ + GYGFI D D F H + I + RK + G+ V F
Sbjct: 1 MSETLQGTVKWFSAQKGYGFITGED-GIDYFAHFSEIQMDGYRK----LSGGQPVLFEAG 55
Query: 329 AGEKGYEAARVTGP 370
G A+ P
Sbjct: 56 TDANGRSLAKNISP 69
>UniRef50_A0ACJ4 Cluster: Putative DNA-binding protein; n=3;
Actinomycetales|Rep: Putative DNA-binding protein -
Streptomyces ambofaciens ATCC 23877
Length = 172
Score = 40.3 bits (90), Expect = 0.011
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G + F+ GYGFI ++ EDVF+H + + R +G G VEF V G++G
Sbjct: 9 GKIIRFDEFRGYGFIAPDNGGEDVFIHVNDLAFDK-----RLLGPGMKVEFDVEEGDRGL 63
Query: 347 EAARV 361
+A+RV
Sbjct: 64 KASRV 68
>UniRef50_Q1RHK6 Cluster: Cold shock-like protein cspA; n=2;
Rickettsia bellii RML369-C|Rep: Cold shock-like protein
cspA - Rickettsia bellii (strain RML369-C)
Length = 70
Score = 40.3 bits (90), Expect = 0.011
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 259
+ G VKWFN +GFI + + +DVFVH++A+
Sbjct: 5 IVGKVKWFNPTKNFGFIEQENGGKDVFVHRSAV 37
>UniRef50_Q2RWM8 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 68
Score = 39.9 bits (89), Expect = 0.014
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEF 319
++GT+ WF+ +GYGFI +D D+ V A+ R +RS+ DG+ V +
Sbjct: 2 LTGTITWFDTINGYGFIRPDDGGGDIAVDMPAL----DRSGLRSLRDGQRVAY 50
>UniRef50_A1SNP5 Cluster: Cold-shock protein, DNA-binding; n=26;
Actinobacteria (class)|Rep: Cold-shock protein,
DNA-binding - Nocardioides sp. (strain BAA-499 / JS614)
Length = 131
Score = 39.9 bits (89), Expect = 0.014
Identities = 21/66 (31%), Positives = 36/66 (54%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+G VKWF+ + G+GF+++ + DV+V A+ S+ G VEF + G +G
Sbjct: 3 TGKVKWFDAEKGFGFLSQ-ENGPDVYVRSEAL-----PAGTSSLKAGTRVEFGIAQGRRG 56
Query: 344 YEAARV 361
+A +V
Sbjct: 57 DQALQV 62
>UniRef50_Q6F7A1 Cluster: Putative cold shock protein; n=2;
Acinetobacter|Rep: Putative cold shock protein -
Acinetobacter sp. (strain ADP1)
Length = 208
Score = 39.5 bits (88), Expect = 0.019
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +2
Query: 173 VKWFNVKSGYGFINRNDT-KEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYE 349
V+WF+ K GYGFI ND+ K VF+H R PR V G A+E+ V+ E+G
Sbjct: 8 VEWFDDK-GYGFIQPNDSQKGRVFLHIRDFARKGPRPIV-----GCALEYLVILDEQGRH 61
Query: 350 AA 355
A
Sbjct: 62 RA 63
>UniRef50_Q6ALH9 Cluster: Hypothetical cold-shock protein; n=1;
Desulfotalea psychrophila|Rep: Hypothetical cold-shock
protein - Desulfotalea psychrophila
Length = 204
Score = 39.5 bits (88), Expect = 0.019
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
GT+K +N + GYGFI ++ DVF+H A + R + G+ + + +G+KG
Sbjct: 4 GTIKHWNDEKGYGFITPDNGGNDVFLHIKAFKKRPHRPEI-----GQVISYGTTSGDKG 57
>UniRef50_Q2RZT3 Cluster: Conserved domain protein; n=2;
Salinibacter ruber DSM 13855|Rep: Conserved domain
protein - Salinibacter ruber (strain DSM 13855)
Length = 75
Score = 39.5 bits (88), Expect = 0.019
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G +K+F+ G+GFI D EDVF+H I + +R +G+ +E+ EKG
Sbjct: 4 GKLKFFDTSRGFGFIEPLDGSEDVFLHANNISGMTSGEDLR---EGQTIEYETEQTEKGL 60
Query: 347 EA 352
A
Sbjct: 61 SA 62
>UniRef50_Q3VJZ1 Cluster: Cold-shock protein, DNA-binding precursor;
n=2; Bacteroidetes/Chlorobi group|Rep: Cold-shock
protein, DNA-binding precursor - Pelodictyon
phaeoclathratiforme BU-1
Length = 91
Score = 39.1 bits (87), Expect = 0.025
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
+GTVKWFN G+GFI ++ DVFVH I + + ++ + + V++ +V
Sbjct: 26 TGTVKWFNKMKGFGFIIPDNGGADVFVH----INELEKSGLATLNEADKVKYDMV 76
>UniRef50_A2UVR3 Cluster: Cold-shock DNA-binding domain protein;
n=1; Shewanella putrefaciens 200|Rep: Cold-shock
DNA-binding domain protein - Shewanella putrefaciens 200
Length = 149
Score = 39.1 bits (87), Expect = 0.025
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
++ G VKWF+V G+GFI D + H + +I + A+ +GD V F ++
Sbjct: 2 RIQGVVKWFSVPQGFGFITSITEGTDHYFHVSDVIGS----ALPEIGD--KVTFETISTP 55
Query: 338 KGYEAARV 361
KG RV
Sbjct: 56 KGLRGKRV 63
>UniRef50_Q5L9T7 Cluster: Cold shock-like protein; n=2; Bacteroides
fragilis|Rep: Cold shock-like protein - Bacteroides
fragilis (strain ATCC 25285 / NCTC 9343)
Length = 69
Score = 38.7 bits (86), Expect = 0.033
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G +++FN GYGF+ D E F H ++ A ++ +G+ V F + G +G
Sbjct: 8 GRIEYFNAAKGYGFVKDADNGEKYFFHISS--------APATIAEGDRVTFEIERGMRGM 59
Query: 347 EAARVT 364
A R++
Sbjct: 60 NAVRIS 65
>UniRef50_Q9ZAH1 Cluster: Cold shock protein C; n=10;
Streptococcaceae|Rep: Cold shock protein C - Lactococcus
lactis
Length = 66
Score = 38.7 bits (86), Expect = 0.033
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G + WFN GYGFI +D +DVF + +I N+ +K +G+ V F + +G
Sbjct: 4 GKINWFNADKGYGFIMADD-MQDVFAYLLSIQGNDFKK----YDEGQKVTFDIKMTSRGR 58
Query: 347 EAARV 361
A+ V
Sbjct: 59 YASNV 63
>UniRef50_Q1QLF4 Cluster: Cold-shock DNA-binding domain protein;
n=1; Nitrobacter hamburgensis X14|Rep: Cold-shock
DNA-binding domain protein - Nitrobacter hamburgensis
(strain X14 / DSM 10229)
Length = 68
Score = 38.3 bits (85), Expect = 0.044
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVH 247
+G+VK+FN + GYGFI +D D+F+H
Sbjct: 3 TGSVKFFNAEKGYGFIQPDDGTPDIFLH 30
>UniRef50_A7BYF1 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. PS|Rep: Putative uncharacterized protein -
Beggiatoa sp. PS
Length = 189
Score = 38.3 bits (85), Expect = 0.044
Identities = 24/67 (35%), Positives = 33/67 (49%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
+ G V F+ K G+GFI + EDVFVH I + +S+ G+ VEF +K
Sbjct: 1 MEGIVVKFDKKRGFGFIRSDKFSEDVFVHLKNI------REQQSLSPGQKVEFDTEQTDK 54
Query: 341 GYEAARV 361
G A V
Sbjct: 55 GLSAINV 61
>UniRef50_A4FKV9 Cluster: Putative DNA-binding protein; n=1;
Saccharopolyspora erythraea NRRL 2338|Rep: Putative
DNA-binding protein - Saccharopolyspora erythraea
(strain NRRL 23338)
Length = 150
Score = 38.3 bits (85), Expect = 0.044
Identities = 25/66 (37%), Positives = 36/66 (54%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GTV F+ GYGFI + EDVF+H +I+ ++ +R G VEF V G +G
Sbjct: 3 TGTVVRFDGIKGYGFIAPDAGGEDVFLH-ASILDEELKEVLRG---GMRVEFEAVPGNQG 58
Query: 344 YEAARV 361
+A V
Sbjct: 59 TKAMTV 64
>UniRef50_A1ZFN2 Cluster: Conserved domain protein; n=2;
Flexibacteraceae|Rep: Conserved domain protein -
Microscilla marina ATCC 23134
Length = 64
Score = 38.3 bits (85), Expect = 0.044
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVH 247
G VK+F GYGFI +DT ED+F H
Sbjct: 4 GVVKFFKEDKGYGFITNSDTGEDIFFH 30
>UniRef50_UPI000150A0B6 Cluster: hypothetical protein
TTHERM_00340170; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00340170 - Tetrahymena
thermophila SB210
Length = 864
Score = 37.5 bits (83), Expect = 0.077
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +2
Query: 155 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVH 247
EK GT+K+F+ YGFI ++++ D+FVH
Sbjct: 617 EKYKGTLKFFDQDKNYGFIVEDESRTDIFVH 647
>UniRef50_A3WZM6 Cluster: Cold shock DNA binding protein; n=1;
Nitrobacter sp. Nb-311A|Rep: Cold shock DNA binding
protein - Nitrobacter sp. Nb-311A
Length = 77
Score = 37.5 bits (83), Expect = 0.077
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
K GTV +N + G+GF+ R+ + ++FVH + + +A S+ G+ +EF + E
Sbjct: 9 KYRGTVVHWNAERGFGFVQRDTDQREIFVHISEV-----DEAYESLVLGQRIEFEIAESE 63
Query: 338 K 340
+
Sbjct: 64 R 64
>UniRef50_A0UNB6 Cluster: Cold-shock DNA-binding domain protein;
n=1; Burkholderia multivorans ATCC 17616|Rep: Cold-shock
DNA-binding domain protein - Burkholderia multivorans
ATCC 17616
Length = 193
Score = 37.5 bits (83), Expect = 0.077
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAII-RNNPRKAVRSVGDGEAVEFAVVAGEKG 343
GTVKWF+ G+GFI ++ D F H + ++ + PR +G+ VEF + ++G
Sbjct: 3 GTVKWFSKDKGHGFI-YGESAVDYFFHVSDVVGADAPR-------EGDIVEFDATSNKRG 54
Query: 344 YEAARV 361
AA V
Sbjct: 55 PRAATV 60
>UniRef50_A6W4V4 Cluster: Putative cold-shock DNA-binding domain
protein; n=1; Kineococcus radiotolerans SRS30216|Rep:
Putative cold-shock DNA-binding domain protein -
Kineococcus radiotolerans SRS30216
Length = 156
Score = 37.1 bits (82), Expect = 0.10
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
+A G V+ F+ G+GFI D E+VF H ++ +G +V+F +
Sbjct: 1 MASLAKGKVRSFDDGRGFGFITSPDCPENVFFHVKDVVDLEAEDL-----EGASVQFTLD 55
Query: 329 AGEKGYEAARV 361
G++GY+A V
Sbjct: 56 QGDRGYKATDV 66
>UniRef50_A2SHE7 Cluster: Cold-shock DNA-binding domain; n=1;
Methylibium petroleiphilum PM1|Rep: Cold-shock
DNA-binding domain - Methylibium petroleiphilum (strain
PM1)
Length = 203
Score = 37.1 bits (82), Expect = 0.10
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
++ G +K +N + G+GFI+ +D+FVH A R V G+AV F V G
Sbjct: 2 RLDGKLKSWNDERGFGFIDPVHGGQDIFVHIKAFPSGTGRPTV-----GQAVTFEVELGP 56
Query: 338 KGYEAAR 358
G + AR
Sbjct: 57 NGKKRAR 63
>UniRef50_Q56922 Cluster: Major cold shock protein; n=31;
Enterobacteriaceae|Rep: Major cold shock protein -
Yersinia enterocolitica
Length = 46
Score = 37.1 bits (82), Expect = 0.10
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +2
Query: 197 GYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
G+GFI D +DVFVH +AI N+ +++ +G+ VEF++ G K
Sbjct: 3 GFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQKVEFSIENGAK 46
>UniRef50_A3X5Q6 Cluster: Putative uncharacterized protein; n=1;
Roseobacter sp. MED193|Rep: Putative uncharacterized
protein - Roseobacter sp. MED193
Length = 463
Score = 36.7 bits (81), Expect = 0.13
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVE 316
+ G +K F G+GFI + EDVF H T + ++ R AV + D +A E
Sbjct: 1 MQGKIKAFIHDKGFGFIEVDGQSEDVFFHITTVKDSSVRCAVGEIVDFDAAE 52
>UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome
shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 14
SCAF14723, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 206
Score = 36.3 bits (80), Expect = 0.18
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRN-------DTKEDVFVHQTAIIRN 268
SG KWFNV+ G+GFI+ D DVFVHQ+ RN
Sbjct: 8 SGFCKWFNVRMGFGFISMTHSEGSPVDPPLDVFVHQSVGGRN 49
Score = 33.1 bits (72), Expect = 1.7
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 287 RSVGDGEAVEFAVVAGEKGYEAARVTGP 370
RS+ +GE VEF KG E+ RVTGP
Sbjct: 111 RSLKEGEQVEFTFKKSTKGLESLRVTGP 138
>UniRef50_A6CF18 Cluster: Probable cold shock protein scoF; n=1;
Planctomyces maris DSM 8797|Rep: Probable cold shock
protein scoF - Planctomyces maris DSM 8797
Length = 65
Score = 35.9 bits (79), Expect = 0.24
Identities = 23/67 (34%), Positives = 37/67 (55%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GT+K K G+GFIN D ++D+F H +++ + V +G+ VEF ++G
Sbjct: 3 TGTIKKITEK-GFGFIN--DGQQDIFFHLSSLDGVTFDQLV----EGQTVEFETEKSDRG 55
Query: 344 YEAARVT 364
A RVT
Sbjct: 56 LRAVRVT 62
>UniRef50_UPI00006CB81E Cluster: conserved hypothetical protein;
n=1; Tetrahymena thermophila SB210|Rep: conserved
hypothetical protein - Tetrahymena thermophila SB210
Length = 1152
Score = 35.5 bits (78), Expect = 0.31
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 155 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVH 247
EK G +K+F+ + +GF N ++ + DVFVH
Sbjct: 878 EKKKGRLKFFDTSNNFGFFNLDEDQSDVFVH 908
>UniRef50_Q475L4 Cluster: Cold-shock protein, DNA-binding; n=1;
Ralstonia eutropha JMP134|Rep: Cold-shock protein,
DNA-binding - Ralstonia eutropha (strain JMP134)
(Alcaligenes eutrophus)
Length = 195
Score = 35.5 bits (78), Expect = 0.31
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
++SGT+K +N G+GFI ++ D+FVH I + PR+ GE++ F V +
Sbjct: 11 RISGTLKSWNKDKGFGFIAPSNGGRDIFVH----ISDYPRQG-GMPKIGESLTFLVTLNQ 65
Query: 338 KGYEAA 355
G A
Sbjct: 66 DGKNKA 71
>UniRef50_Q9KI38 Cluster: Ysb; n=2; Agrobacterium tumefaciens|Rep:
Ysb - Agrobacterium tumefaciens
Length = 100
Score = 35.5 bits (78), Expect = 0.31
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 259
+G VKWF+ +GFI +D DVF+H ++I
Sbjct: 3 TGKVKWFDATKRFGFITPDDGGPDVFLHLSSI 34
>UniRef50_Q74JX5 Cluster: Cold shock protein; n=5;
Lactobacillus|Rep: Cold shock protein - Lactobacillus
johnsonii
Length = 69
Score = 35.1 bits (77), Expect = 0.41
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTVK F+ S YGFI + T FV +I + + + G+ V + + G+KG
Sbjct: 4 GTVKQFDPNSAYGFIEDDLTHSSYFVFYKSI----KEEGYKKLNVGQRVRYQLAQGKKGL 59
Query: 347 EAARV 361
+ V
Sbjct: 60 QCINV 64
>UniRef50_Q6SK65 Cluster: Peptide synthetase; n=5; cellular
organisms|Rep: Peptide synthetase - Arthrobacter
aurescens
Length = 1407
Score = 35.1 bits (77), Expect = 0.41
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGD 301
+G + V G++NR+D E VF+ IRNNP + GD
Sbjct: 387 TGEIGLAGVGLAKGYVNRDDLTEKVFIPDFLAIRNNPSARIYRTGD 432
>UniRef50_Q03EZ0 Cluster: Cold shock protein; n=1; Pediococcus
pentosaceus ATCC 25745|Rep: Cold shock protein -
Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)
Length = 69
Score = 35.1 bits (77), Expect = 0.41
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+GTV+ F+ + GYGFI + + VF H T +I++ K + GE V+ + G KG
Sbjct: 3 TGTVESFDKEKGYGFI-ETASGDKVFAHYT-VIQSEDYKTLEV---GEKVKLMLADGPKG 57
Query: 344 YEAARV 361
A +V
Sbjct: 58 LIAVKV 63
>UniRef50_A0BFX7 Cluster: Chromosome undetermined scaffold_105,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_105,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 383
Score = 35.1 bits (77), Expect = 0.41
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 155 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQ 250
E+V G +K++N YGF + K+D+FVHQ
Sbjct: 299 ERVIGYLKFYNESKQYGFFLDDKNKKDIFVHQ 330
>UniRef50_Q5YVF2 Cluster: Putative cold shock protein; n=1; Nocardia
farcinica|Rep: Putative cold shock protein - Nocardia
farcinica
Length = 122
Score = 34.7 bits (76), Expect = 0.54
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 259
GTV WF+ + G+GFI +D VFV AI
Sbjct: 54 GTVAWFDAEKGFGFITPDDRSPAVFVEFHAI 84
>UniRef50_Q4FUZ6 Cluster: Possible guanine-specific ribonuclease
with a cold-shock DNA-binding domain; n=2;
Psychrobacter|Rep: Possible guanine-specific
ribonuclease with a cold-shock DNA-binding domain -
Psychrobacter arcticum
Length = 247
Score = 34.7 bits (76), Expect = 0.54
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNP 274
SG +K +N GYGFI+ ++ EDVF H ++ P
Sbjct: 3 SGKIKHWNSDKGYGFIDVDNQSEDVFFHIKSVQMAQP 39
>UniRef50_Q9HP26 Cluster: Cold shock protein; n=11;
Halobacteriaceae|Rep: Cold shock protein - Halobacterium
salinarium (Halobacterium halobium)
Length = 69
Score = 34.7 bits (76), Expect = 0.54
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRN----DTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 331
SG V +FN GYGFI+ + D EDVF H + P + +G+ VEF + +
Sbjct: 3 SGKVDFFNDTGGYGFISTDADDVDDDEDVFFHMEDV--GGP-----DLEEGQEVEFDIES 55
Query: 332 GEKGYEAARV 361
KG A +
Sbjct: 56 SPKGPRATNL 65
>UniRef50_Q1YTJ3 Cluster: Cold shock protein; n=1; gamma
proteobacterium HTCC2207|Rep: Cold shock protein - gamma
proteobacterium HTCC2207
Length = 89
Score = 34.3 bits (75), Expect = 0.72
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+G VKWF+ G+GFI ++ + ++F H II + +++ + V + V G+ G
Sbjct: 4 TGRVKWFSNDRGFGFIEPDNGERELFAHHQNII----MEGYKTLKCFQRVTYDVEHGKNG 59
Query: 344 YEAARV 361
A +
Sbjct: 60 RHAVNI 65
>UniRef50_Q12K82 Cluster: Putative uncharacterized protein; n=1;
Shewanella denitrificans OS217|Rep: Putative
uncharacterized protein - Shewanella denitrificans
(strain OS217 / ATCC BAA-1090 / DSM 15013)
Length = 196
Score = 34.3 bits (75), Expect = 0.72
Identities = 21/61 (34%), Positives = 35/61 (57%)
Frame = +2
Query: 173 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEA 352
V+W + K G+GFI N T +VF+H +A+ R A R + + + +A+VA ++G
Sbjct: 8 VRWDDDK-GFGFIRPNLTGPEVFLHISAL-----RNASRRPQEDDVITYALVADKQGRPT 61
Query: 353 A 355
A
Sbjct: 62 A 62
>UniRef50_A0X3F5 Cluster: Cold-shock DNA-binding domain protein;
n=1; Shewanella pealeana ATCC 700345|Rep: Cold-shock
DNA-binding domain protein - Shewanella pealeana ATCC
700345
Length = 205
Score = 34.3 bits (75), Expect = 0.72
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +2
Query: 152 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 331
A+ +G + +N G+GFI + K+ VF+H +A +PR G+ V+F +
Sbjct: 4 AQVSTGVIDSWNDDKGFGFIQIPEQKQQVFLHISAFASQSPRPQ-----SGKQVQFTLAK 58
Query: 332 GEKG 343
++G
Sbjct: 59 DKQG 62
>UniRef50_P81622 Cluster: Cold shock protein CspSt; n=6;
Streptococcus thermophilus|Rep: Cold shock protein CspSt
- Streptococcus thermophilus
Length = 21
Score = 34.3 bits (75), Expect = 0.72
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRND 223
+GTVKWFN + G+GFI D
Sbjct: 2 NGTVKWFNAEKGFGFITSED 21
>UniRef50_Q48493 Cluster: Major cold shock protein; n=50;
Bacteria|Rep: Major cold shock protein - Klebsiella
pneumoniae
Length = 46
Score = 34.3 bits (75), Expect = 0.72
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 197 GYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
G+GFI+ D +DVFVH +AI + +++ +G+ V F + G K
Sbjct: 3 GFGFISPKDGSKDVFVHFSAI----QSDSFKTLNEGQEVSFTIENGAK 46
>UniRef50_UPI00006CB6F6 Cluster: ''''Cold-shock'''' DNA-binding
domain containing protein; n=1; Tetrahymena thermophila
SB210|Rep: ''''Cold-shock'''' DNA-binding domain
containing protein - Tetrahymena thermophila SB210
Length = 725
Score = 33.9 bits (74), Expect = 0.95
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNN-PRKAVRSVGDGEAVEFA 322
G++K+F+ YGFI +D D+FVH + + ++ ++S G + F+
Sbjct: 615 GSLKFFDENKNYGFIVMDDDNRDIFVHYDDLQKAGITKEFLKSSKQGNVIRFS 667
>UniRef50_Q49V75 Cluster: Putative oxidoreductase; n=1;
Staphylococcus saprophyticus subsp. saprophyticus ATCC
15305|Rep: Putative oxidoreductase - Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305
/DSM 20229)
Length = 359
Score = 33.9 bits (74), Expect = 0.95
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 328 NHGKLHRLSVAYRT-HSLARVVSDYRSLMYKHIFFGVIPIDETISTLD 188
N G R+++ + SL R+ +DY L Y H++ G P++ETI ++
Sbjct: 96 NDGGAGRVNIEHSIDESLQRLNTDYIDLYYTHLWDGQTPVEETIQVMN 143
>UniRef50_Q127M7 Cluster: Cold-shock DNA-binding domain protein;
n=1; Polaromonas sp. JS666|Rep: Cold-shock DNA-binding
domain protein - Polaromonas sp. (strain JS666 / ATCC
BAA-500)
Length = 193
Score = 33.9 bits (74), Expect = 0.95
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
+ GT+K +N + G GFI + +++FVH +A R+ AV GE + F V
Sbjct: 7 RFDGTLKKWNAERGLGFIVADQGGQEIFVHISAFPRDGRLPAV-----GEPLSFEVEPDR 61
Query: 338 KGYEAA 355
G + A
Sbjct: 62 DGKKCA 67
>UniRef50_A1GFH1 Cluster: Cold-shock DNA-binding domain protein;
n=2; Salinispora|Rep: Cold-shock DNA-binding domain
protein - Salinispora arenicola CNS205
Length = 139
Score = 33.9 bits (74), Expect = 0.95
Identities = 24/65 (36%), Positives = 32/65 (49%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GT+ F+ GYGFI +DVFVH + R AV + G V + VV E+G
Sbjct: 5 GTIVRFDDVRGYGFIAPFGGGDDVFVHANDF--GDQRHAVAA---GMRVSYEVVQSERGL 59
Query: 347 EAARV 361
+ A V
Sbjct: 60 KVASV 64
>UniRef50_UPI000050F90E Cluster: COG1278: Cold shock proteins; n=1;
Brevibacterium linens BL2|Rep: COG1278: Cold shock
proteins - Brevibacterium linens BL2
Length = 126
Score = 33.5 bits (73), Expect = 1.3
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+G VKWF+V G+GF+ D + F+H + + P A V G +++ VV +G
Sbjct: 3 TGRVKWFDVDKGFGFVIAEDGSQ-AFLHSSVL----PEDA--EVTKGTRLDYDVVDSRRG 55
Query: 344 YEAAR 358
+ +
Sbjct: 56 AQVLK 60
>UniRef50_Q9RBP7 Cluster: Cold shock protein 7.4; n=2;
Rhodococcus|Rep: Cold shock protein 7.4 - Rhodococcus
sp. 7/1
Length = 57
Score = 33.5 bits (73), Expect = 1.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 176 KWFNVKSGYGFINRNDTKEDVFVHQTAI 259
+W+N + G+G + +D +D FVH TA+
Sbjct: 3 RWYNAEKGFGCLTPDDGSKDCFVHFTAL 30
>UniRef50_Q4Q8I6 Cluster: RNA binding protein rbp16, putative; n=5;
Trypanosomatidae|Rep: RNA binding protein rbp16,
putative - Leishmania major
Length = 142
Score = 33.5 bits (73), Expect = 1.3
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +2
Query: 173 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEA 352
V W + + G+GFI N K+ FVH +A+ R++ + VEF V + + A
Sbjct: 23 VSWMSGR-GFGFIEDNADKKQHFVHFSAL--QTETGGYRALAVDQEVEFEVASQDGRTRA 79
Query: 353 ARVTGP 370
VT P
Sbjct: 80 ENVTAP 85
>UniRef50_Q51929 Cluster: Major cold shock protein; n=74;
Bacteria|Rep: Major cold shock protein - Photobacterium
mondopomensis
Length = 46
Score = 33.5 bits (73), Expect = 1.3
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +2
Query: 191 KSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
+ G+GF+ +N+ DVFVH AI + +++ +G+ V F V G+K
Sbjct: 1 EKGFGFLTQNNGGADVFVHFRAI----ASEGFKTLTEGQKVSFDVEQGQK 46
>UniRef50_Q88Q61 Cluster: Cold shock DNA-binding domain protein;
n=1; Pseudomonas putida KT2440|Rep: Cold shock
DNA-binding domain protein - Pseudomonas putida (strain
KT2440)
Length = 246
Score = 33.1 bits (72), Expect = 1.7
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
SG V+ F + G+GFI +D + FVH I+N + DG++V F G KG
Sbjct: 13 SGVVRSFMPEKGFGFIQGDDGRS-YFVH----IKNVEGG---ELFDGQSVAFEGQPGPKG 64
Query: 344 YEAARV 361
Y A +V
Sbjct: 65 YRAVKV 70
>UniRef50_Q5YWN0 Cluster: Putative uncharacterized protein; n=1;
Nocardia farcinica|Rep: Putative uncharacterized protein
- Nocardia farcinica
Length = 441
Score = 33.1 bits (72), Expect = 1.7
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 203 GFIN-RNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEAARVTG 367
G IN R+D +D+ H R P V VG+ A+ FAV A GY+AA + G
Sbjct: 372 GAINLRDDLLDDMLTHGVPFPRGRPVVFVCPVGE-VALRFAVRARRAGYDAASLDG 426
>UniRef50_A5EWK7 Cluster: Cold-shock DNA-binding domain protein;
n=1; Dichelobacter nodosus VCS1703A|Rep: Cold-shock
DNA-binding domain protein - Dichelobacter nodosus
(strain VCS1703A)
Length = 210
Score = 33.1 bits (72), Expect = 1.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 155 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPR 277
E +GTV ++N G+GFI+ N+ + +VF H + N R
Sbjct: 9 EICTGTVVYWNDDKGFGFIDTNEKQANVFFHISHFAYENRR 49
>UniRef50_A3S070 Cluster: Cold shock protein; n=1; Ralstonia
solanacearum UW551|Rep: Cold shock protein - Ralstonia
solanacearum UW551
Length = 82
Score = 33.1 bits (72), Expect = 1.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVF 241
+GTVKWFN G+GFI + D+F
Sbjct: 45 TGTVKWFNETKGFGFITPDGGGADLF 70
>UniRef50_A0CIJ2 Cluster: Chromosome undetermined scaffold_19, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_19,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 433
Score = 33.1 bits (72), Expect = 1.7
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVH 247
+G +K+F+ + YGFI ++ K D+FVH
Sbjct: 346 TGRLKFFDEQKNYGFIVMDEDKSDIFVH 373
>UniRef50_Q48AJ7 Cluster: Cold-shock DNA-binding domain family
protein; n=1; Colwellia psychrerythraea 34H|Rep:
Cold-shock DNA-binding domain family protein - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 201
Score = 32.7 bits (71), Expect = 2.2
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +2
Query: 173 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
++W N +GFI N + + +F+H+TA+ N + + + F+V+ +G
Sbjct: 8 IRW-NTDKAFGFITPNGSGDTIFIHKTALKNRNRTPKINDI-----ISFSVIQDNQG 58
>UniRef50_A6ENM6 Cluster: Cold shock protein; n=9;
Bacteroidetes|Rep: Cold shock protein - unidentified
eubacterium SCB49
Length = 153
Score = 32.7 bits (71), Expect = 2.2
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
GTV +++ G+GFI K+ F H + +I + +G V F + G++G
Sbjct: 93 GTVDFYDSSKGFGFIIDGKDKQKYFCHVSGLI--------DEITEGNLVSFELEKGQRGM 144
Query: 347 EAARV 361
A +V
Sbjct: 145 NAVKV 149
>UniRef50_UPI0000D57810 Cluster: PREDICTED: similar to CG9705-PA,
isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to CG9705-PA, isoform A - Tribolium castaneum
Length = 121
Score = 32.3 bits (70), Expect = 2.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 155 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVH 247
+ + G +K F + G+GFI D ED+FVH
Sbjct: 40 QNLYGEIKSFCREKGHGFITPEDGSEDIFVH 70
>UniRef50_Q82LM1 Cluster: Putative aryl-alcohol dehydrogenase; n=1;
Streptomyces avermitilis|Rep: Putative aryl-alcohol
dehydrogenase - Streptomyces avermitilis
Length = 342
Score = 32.3 bits (70), Expect = 2.9
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = -1
Query: 331 GNHGKLHRLSVAYRTHSLARVVSDYRSLMYKHIFFGVIPIDETISTLD 188
GNH K L+++ T SL R+ +DY + + HI+ PI+ET+ LD
Sbjct: 96 GNHRK--NLTLSLET-SLRRLGTDYIDVYWVHIWDRNTPIEETVRALD 140
>UniRef50_Q6XYV4 Cluster: Transcriptional regulator; n=2;
Spiroplasma|Rep: Transcriptional regulator - Spiroplasma
kunkelii
Length = 271
Score = 32.3 bits (70), Expect = 2.9
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 197 GYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV-VAGEKGYEAARVTG 367
G+ N N+ +ED+ V + +N+ A GD E+V A+ +A EKG ++G
Sbjct: 146 GFNAFNLNENEEDLMVRSRIMNKNDLILAYSLFGDNESVNKALTIAKEKGVTIVVISG 203
>UniRef50_Q3W076 Cluster: Cold-shock DNA-binding domain; n=2;
Frankia|Rep: Cold-shock DNA-binding domain - Frankia sp.
EAN1pec
Length = 146
Score = 32.3 bits (70), Expect = 2.9
Identities = 21/64 (32%), Positives = 35/64 (54%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
+G V F+ GYGF+ +D EDVF+H ++ K++ V G +EF V ++G
Sbjct: 3 TGKVLRFDHVRGYGFLAPSDGGEDVFLHANDLL---VEKSL--VVPGVVMEFEVEESDRG 57
Query: 344 YEAA 355
+A+
Sbjct: 58 RKAS 61
>UniRef50_A4KQU6 Cluster: Cold shock protein; n=7; Francisella
tularensis|Rep: Cold shock protein - Francisella
tularensis subsp. holarctica 257
Length = 143
Score = 32.3 bits (70), Expect = 2.9
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
+ G VK++N GYGFI ++++D F N K + VEF V +K
Sbjct: 1 MQGIVKFYNKDKGYGFIYSEESEKDFF------FSINDWKNPTVPNGSDDVEFEVAQSKK 54
Query: 341 GYEAARV 361
G +A +
Sbjct: 55 GEKAINI 61
>UniRef50_Q6UUP0 Cluster: Putative polyprotein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Putative polyprotein -
Oryza sativa subsp. japonica (Rice)
Length = 1392
Score = 32.3 bits (70), Expect = 2.9
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 328
+ KV V VKS F + D +E + A I+ NP K V SV G+ ++F V
Sbjct: 634 LGRKVEAYVDDIVVKSRKAFDHAFDLQETFDSLRAAGIKQNPEKCVFSVRVGKLLDFLV- 692
Query: 329 AGEKGYEA 352
E+G EA
Sbjct: 693 -SERGIEA 699
>UniRef50_Q9VVA0 Cluster: CG9705-PA, isoform A; n=4; Diptera|Rep:
CG9705-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 143
Score = 32.3 bits (70), Expect = 2.9
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 259
V+G VK F+ G+GFI N EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87
>UniRef50_Q0U631 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 447
Score = 32.3 bits (70), Expect = 2.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 352 CFIAFLPGNHGKLHRLSVAYRTHSLARVVSDYRSLMYKHIFF 227
C I PG H L R++ YR + + SDYRS + ++F
Sbjct: 172 CIIQDSPGRHTFLSRMNEVYRAATKKQENSDYRSHFEQQVYF 213
>UniRef50_Q5Z0N3 Cluster: Putative cold shock protein; n=1; Nocardia
farcinica|Rep: Putative cold shock protein - Nocardia
farcinica
Length = 89
Score = 31.9 bits (69), Expect = 3.8
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFIN-RNDTKEDVFVHQTAI--------IRNNPRKAVRSVGDGEAV 313
GTV WF+ G+GFI + VFV ++I + P + VRS G EAV
Sbjct: 17 GTVAWFDAPKGFGFIEPAEGPRGPVFVDFSSIEMSGYRTLVEGQPVRFVRSAGRAEAV 74
>UniRef50_Q5P4M3 Cluster: Probable cold shock family protein; n=1;
Azoarcus sp. EbN1|Rep: Probable cold shock family
protein - Azoarcus sp. (strain EbN1) (Aromatoleum
aromaticum (strain EbN1))
Length = 189
Score = 31.9 bits (69), Expect = 3.8
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAV 286
++ GT+ +N G+GFI D +VFVH +A R+ R +
Sbjct: 2 RIEGTLGKWNDDRGFGFIVPKDGGPEVFVHVSAFPRDGRRPQI 44
>UniRef50_Q8RQV5 Cluster: Transposase; n=1; Lactobacillus
helveticus|Rep: Transposase - Lactobacillus helveticus
Length = 453
Score = 31.9 bits (69), Expect = 3.8
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -1
Query: 304 SVAYRTHSLARVVSDYRSLMYKHIFFGVIPIDETISTLDVEPFDSTRNLFSND 146
S+ Y THS+ +V + H+ F P DE I+ + + F +T N ++
Sbjct: 3 SLNYTTHSVDSIVKSCLDISDPHLHFSNEPYDEKINGISYKVFQATINFLPHE 55
>UniRef50_Q84IJ3 Cluster: Cold shock protein; n=1; Janthinobacterium
sp. J3|Rep: Cold shock protein - Janthinobacterium sp.
J3
Length = 174
Score = 31.9 bits (69), Expect = 3.8
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSV 295
++ G V +N + G+GFI +N T E F+H +A+ + R + S+
Sbjct: 2 RLQGRVIEWNDERGFGFIIQNGTSERTFLHISALRKTKGRPLLGSL 47
>UniRef50_Q7WXG5 Cluster: Putative uncharacterized protein; n=1;
Ralstonia eutropha H16|Rep: Putative uncharacterized
protein - Ralstonia eutropha (strain ATCC 17699 / H16 /
DSM 428 / Stanier 337)(Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier337))
Length = 191
Score = 31.9 bits (69), Expect = 3.8
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 337
K +G VK ++ G+GFI+ +DVF H TA+ +AV G+ V F + G+
Sbjct: 2 KKAGQVKTWHADKGFGFIDVYADMKDVFFHVTAL----QTRAVTPT-PGDRVSFELGKGK 56
Query: 338 KG 343
G
Sbjct: 57 DG 58
>UniRef50_A4V785 Cluster: Putative cold shock domain transmembrane
protein; n=1; Pseudomonas fluorescens SBW25|Rep:
Putative cold shock domain transmembrane protein -
Pseudomonas fluorescens SBW25
Length = 282
Score = 31.9 bits (69), Expect = 3.8
Identities = 23/72 (31%), Positives = 30/72 (41%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
+ A + G V F GYGFI+ D E FVHQ + P + G+ V F
Sbjct: 20 IAAGSIEGEVISFVASKGYGFIS-GDDGERYFVHQKDVKGGEP------LTSGQRVTFVP 72
Query: 326 VAGEKGYEAARV 361
KG +A V
Sbjct: 73 TPSPKGSKARHV 84
>UniRef50_Q98EU0 Cluster: Oxidoreductase; MocA; n=27; Bacteria|Rep:
Oxidoreductase; MocA - Rhizobium loti (Mesorhizobium
loti)
Length = 344
Score = 31.5 bits (68), Expect = 5.1
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 334 PGNHGKLHRLSVAYRTHSLARVVSDYRSLMYKHIFFGVIPIDETISTLD 188
P ++G + +L R+ +DY L+ H F P++E +STLD
Sbjct: 96 PADYGSSRSRLIKSVDAALKRLGTDYIDLLQLHAFDAGTPVEEVLSTLD 144
>UniRef50_Q83N46 Cluster: Cold shock protein B; n=2; Tropheryma
whipplei|Rep: Cold shock protein B - Tropheryma whipplei
(strain Twist) (Whipple's bacillus)
Length = 125
Score = 31.5 bits (68), Expect = 5.1
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 343
GTV+++N + G+GF+ +D E VF+ A+ V + G V++ G+KG
Sbjct: 4 GTVRFYNKERGFGFV-VSDDGESVFLPAKAL-----PDGVSDLSPGTRVDYGAALGKKG 56
>UniRef50_Q5PBP1 Cluster: Cold shock protein; n=7;
Anaplasmataceae|Rep: Cold shock protein - Anaplasma
marginale (strain St. Maries)
Length = 92
Score = 31.5 bits (68), Expect = 5.1
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 13/48 (27%)
Frame = +2
Query: 164 SGTVKWFNVKSGYGFI---NRNDTK----------EDVFVHQTAIIRN 268
+G VKWF+V+ GYGFI +D K +DVFVH T++ R+
Sbjct: 13 TGHVKWFSVEKGYGFICKDGSDDGKSGGASFGRGDKDVFVHITSLQRS 60
>UniRef50_Q15JF3 Cluster: Putative oxidoreductase; n=1; Streptomyces
hygroscopicus subsp. limoneus|Rep: Putative
oxidoreductase - Streptomyces hygroscopicus subsp.
limoneus
Length = 359
Score = 31.5 bits (68), Expect = 5.1
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = -1
Query: 322 GKLHRLSVAYRTHSLARVVSDYRSLMYKHIFFGVIPIDETIS 197
G R VA SL R+ +D+ L+Y H++ GV P++E+++
Sbjct: 103 GCSRRNVVASVERSLRRLGTDHIDLLYLHLWDGVTPVEESLA 144
>UniRef50_A1TSW1 Cluster: Cold-shock DNA-binding domain protein;
n=2; Acidovorax avenae subsp. citrulli AAC00-1|Rep:
Cold-shock DNA-binding domain protein - Acidovorax
avenae subsp. citrulli (strain AAC00-1)
Length = 224
Score = 31.5 bits (68), Expect = 5.1
Identities = 22/63 (34%), Positives = 28/63 (44%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
G + +N G+GFI + VFVH A PR G+ V FAV AG G
Sbjct: 5 GVIASWNDARGFGFIEPLQGGDPVFVHIKAFQGGAPRPQA-----GQRVRFAVEAGPGGR 59
Query: 347 EAA 355
+ A
Sbjct: 60 KRA 62
>UniRef50_Q019N2 Cluster: Chromosome 05 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 05 contig 1, DNA
sequence - Ostreococcus tauri
Length = 73
Score = 31.5 bits (68), Expect = 5.1
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 158 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 259
+ SGTVKWFN D EDVFVHQ+A+
Sbjct: 7 RASGTVKWFNF----------DGSEDVFVHQSAL 30
>UniRef50_Q248G5 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 452
Score = 31.5 bits (68), Expect = 5.1
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 155 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVH 247
EKV+G++K+F+ K +GF + D+FV+
Sbjct: 302 EKVTGSLKFFDEKKNFGFFVLDSDGSDIFVY 332
>UniRef50_A2ES44 Cluster: Leucine Rich Repeat family protein; n=1;
Trichomonas vaginalis G3|Rep: Leucine Rich Repeat family
protein - Trichomonas vaginalis G3
Length = 841
Score = 31.5 bits (68), Expect = 5.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 200 YGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
YGF+ N T+ D+F II N + + D EAV+ V
Sbjct: 222 YGFVCNNFTRHDIFQSIAPIIEQNESIRIIKITDAEAVDGCV 263
>UniRef50_UPI00005100E5 Cluster: COG0667: Predicted oxidoreductases
(related to aryl-alcohol dehydrogenases); n=1;
Brevibacterium linens BL2|Rep: COG0667: Predicted
oxidoreductases (related to aryl-alcohol dehydrogenases)
- Brevibacterium linens BL2
Length = 342
Score = 31.1 bits (67), Expect = 6.7
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = -1
Query: 283 SLARVVSDYRSLMYKHIFFGVIPIDETISTLD 188
SL+R+ +D+ L+Y H + G PI ETI+T++
Sbjct: 97 SLSRLRTDHLDLLYIHQWDGQTPITETIATVN 128
>UniRef50_Q89JX0 Cluster: Oxidoreductase; n=26; Bacteria|Rep:
Oxidoreductase - Bradyrhizobium japonicum
Length = 370
Score = 31.1 bits (67), Expect = 6.7
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 334 PGNHGKLHRLSVAYRTHSLARVVSDYRSLMYKHIFFGVIPIDETISTLDV 185
P + G + +A SLAR+ +DY L H F P +E ++TLDV
Sbjct: 124 PNDIGSSRQHLLAAIDGSLARLGTDYIDLFQLHGFDAFTPPEEVLATLDV 173
>UniRef50_Q39G79 Cluster: Aldo/keto reductase; n=5; Bacteria|Rep:
Aldo/keto reductase - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 332
Score = 31.1 bits (67), Expect = 6.7
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 334 PGNHGKLHRLSVAYRTHSLARVVSDYRSLMYKHIFFGVIPIDETISTLD 188
P G H+ + SL R+ +DY L HI+ PI+ET+ LD
Sbjct: 70 PNGGGTGHKAIIDQCEASLRRLQTDYIDLYQMHIWDRHTPIEETMRALD 118
>UniRef50_Q1ZUW9 Cluster: Predicted membrane protein; n=3;
Vibrionaceae|Rep: Predicted membrane protein - Vibrio
angustum S14
Length = 204
Score = 31.1 bits (67), Expect = 6.7
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +2
Query: 173 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEA 352
+ W N + G+GFI ++ ++DVF H +A+ P K R EA+ F + +KG +
Sbjct: 8 ISW-NQQKGFGFIAPDNGEQDVFFHVSAL----PDKQCRP-RINEAITFCIGKDKKGRMS 61
Query: 353 A 355
A
Sbjct: 62 A 62
>UniRef50_A4VQF2 Cluster: Cold-shock DNA-binding domain protein;
n=10; Pseudomonas|Rep: Cold-shock DNA-binding domain
protein - Pseudomonas stutzeri (strain A1501)
Length = 235
Score = 31.1 bits (67), Expect = 6.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 259
GT+K +N G+GFI E++FVH +A+
Sbjct: 5 GTLKSWNDDKGFGFIRPEQGGEELFVHISAV 35
>UniRef50_Q00258 Cluster: Norsolorinic acid reductase; n=17;
Dikarya|Rep: Norsolorinic acid reductase - Aspergillus
parasiticus
Length = 388
Score = 31.1 bits (67), Expect = 6.7
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = -1
Query: 331 GNHGKLHRLSVAYRTHSLARVVSDYRSLMYKHIFFGVIPIDETISTLD 188
GNH K RLSV SL ++ +DY L+Y H++ ++E + +L+
Sbjct: 120 GNHAKSLRLSVKA---SLQKLQTDYIDLLYVHMWDFTTSVEEVMRSLN 164
>UniRef50_Q7UKQ7 Cluster: Similar to cold shock-like protein cspI;
n=1; Pirellula sp.|Rep: Similar to cold shock-like
protein cspI - Rhodopirellula baltica
Length = 127
Score = 30.7 bits (66), Expect = 8.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVH 247
I ++ G +K + YGFI+ +D +EDVF H
Sbjct: 18 IQKRRLGRIKVIKPEGEYGFIDSDDFREDVFFH 50
>UniRef50_Q6XUT6 Cluster: Oxido-reductase/dehydratase; n=3;
Bacteria|Rep: Oxido-reductase/dehydratase - Pseudomonas
sp. ND6
Length = 343
Score = 30.7 bits (66), Expect = 8.9
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 286 HSLARVVSDYRSLMYKHIFFGVIPIDETISTLD 188
+SL R+ +DY L H F + P++ET+STL+
Sbjct: 111 NSLRRLGTDYLDLYIVHSFDFMTPLEETLSTLN 143
>UniRef50_Q11BU4 Cluster: Aldo/keto reductase; n=11;
Proteobacteria|Rep: Aldo/keto reductase - Mesorhizobium
sp. (strain BNC1)
Length = 355
Score = 30.7 bits (66), Expect = 8.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 334 PGNHGKLHRLSVAYRTHSLARVVSDYRSLMYKHIFFGVIPIDETISTL 191
P G +A SL R+ +D+ L Y H + G+ P++ET+ L
Sbjct: 100 PNERGSGRAHLIAQCEASLRRLKTDHIDLYYVHAWDGLTPLEETLGAL 147
>UniRef50_A0C7B7 Cluster: Chromosome undetermined scaffold_155,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_155,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 237
Score = 30.7 bits (66), Expect = 8.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 268 VSDYRSLMYKHIFFGVIPIDETISTLDVEPFDS 170
V Y + ++H+F + P+ ETIS+L E F+S
Sbjct: 165 VHQYSNPKFQHLFNQISPVQETISSLTDERFES 197
>UniRef50_Q9Y534 Cluster: Cold shock domain-containing protein C2;
n=33; Euteleostomi|Rep: Cold shock domain-containing
protein C2 - Homo sapiens (Human)
Length = 153
Score = 30.7 bits (66), Expect = 8.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 259
G K F+ G+GFI + ED+FVH + I
Sbjct: 71 GVCKQFSRSQGHGFITPENGSEDIFVHVSDI 101
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 286,922,655
Number of Sequences: 1657284
Number of extensions: 4107820
Number of successful extensions: 12596
Number of sequences better than 10.0: 248
Number of HSP's better than 10.0 without gapping: 12322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12556
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13647406432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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