Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P04
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   2.1  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    25   2.8  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   3.7  
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    24   6.5  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    24   6.5  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   8.6  

>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 370 GTSNSGCFIAFLPGNHGKLHRLSVAYRTHSLARVVS 263
           GT N GC +   P     L RLS+     S+A  ++
Sbjct: 832 GTQNVGCLLRIEPNYEQNLIRLSIRSTNTSIANTLA 867


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 185 NVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK 280
           N K  Y + + ++  E +F   T I+ NNP+K
Sbjct: 254 NDKENYNYPDFSNDNELLFSLATLIVENNPKK 285


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 286 HSLARVVSDYRSLMYKHIFFGVIPIDETISTLDVE 182
           H LA VV D + +    I  G + + + IS +D+E
Sbjct: 231 HDLAAVVDDDKDIAQSIINAGKVSMGQDISEIDLE 265


>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 216 LLMKPYPLLTLNHLTVPETFSAMTCFCLAGL 124
           LL + Y L   ++  +PE+  A  CF +  L
Sbjct: 53  LLQRAYALRACSNSLLPESIEARKCFLIESL 83


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 170 TVKWFNVKSGYG-FINRNDTKEDV 238
           T+KW N+ SG G F+ + +  ED+
Sbjct: 879 TIKWDNLNSGPGPFVPQTENVEDL 902


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 283 SLARVVSDYRSLMYKHIFFGVIPIDETIST 194
           S++   SDY   +++ I   VIP  + IST
Sbjct: 31  SISEYQSDYSKTVFEEIELEVIPNKQNIST 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,180,215
Number of Sequences: 5004
Number of extensions: 17011
Number of successful extensions: 47
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)