Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P04
         (370 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061440-1|AAL28988.1|  352|Drosophila melanogaster LD37574p pro...   137   4e-33
AE014296-2093|AAF49961.3|  352|Drosophila melanogaster CG5654-PA...   137   4e-33
U49120-1|AAB94634.1|  359|Drosophila melanogaster Y-box protein ...   131   3e-31
AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p pro...    58   5e-09
AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding ...    58   5e-09
AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA...    58   5e-09
AY060441-1|AAL25480.1|  143|Drosophila melanogaster LD47312p pro...    32   0.20 
AE014296-2798|AAN11740.1|  143|Drosophila melanogaster CG9705-PB...    32   0.20 
AE014296-2797|AAF49414.1|  143|Drosophila melanogaster CG9705-PA...    32   0.20 
AE013599-3457|AAF46894.2| 1227|Drosophila melanogaster CG30268-P...    30   0.83 
BT029686-1|ABL75743.1|  394|Drosophila melanogaster IP17383p pro...    27   7.7  
AY160083-1|AAN77520.1| 1910|Drosophila melanogaster alpha1U prot...    27   7.7  
AE014298-2026|AAF48365.2| 2196|Drosophila melanogaster CG1517-PB...    27   7.7  

>AY061440-1|AAL28988.1|  352|Drosophila melanogaster LD37574p
           protein.
          Length = 352

 Score =  137 bits (332), Expect = 4e-33
 Identities = 64/75 (85%), Positives = 68/75 (90%)
 Frame = +2

Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
           VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AI RNNP+KAVRSVGDGE VEF V
Sbjct: 57  VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116

Query: 326 VAGEKGYEAARVTGP 370
           V GEKG EAA VTGP
Sbjct: 117 VIGEKGNEAANVTGP 131


>AE014296-2093|AAF49961.3|  352|Drosophila melanogaster CG5654-PA
           protein.
          Length = 352

 Score =  137 bits (332), Expect = 4e-33
 Identities = 64/75 (85%), Positives = 68/75 (90%)
 Frame = +2

Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
           VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AI RNNP+KAVRSVGDGE VEF V
Sbjct: 57  VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116

Query: 326 VAGEKGYEAARVTGP 370
           V GEKG EAA VTGP
Sbjct: 117 VIGEKGNEAANVTGP 131


>U49120-1|AAB94634.1|  359|Drosophila melanogaster Y-box protein
           protein.
          Length = 359

 Score =  131 bits (316), Expect = 3e-31
 Identities = 63/75 (84%), Positives = 67/75 (89%)
 Frame = +2

Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
           VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+A I NNP+KAVRSVGDGE VEF V
Sbjct: 58  VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSA-IANNPKKAVRSVGDGEVVEFDV 116

Query: 326 VAGEKGYEAARVTGP 370
           V GEKG EAA VTGP
Sbjct: 117 VIGEKGNEAANVTGP 131


>AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p
           protein.
          Length = 195

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 29/66 (43%), Positives = 38/66 (57%)
 Frame = +2

Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
           G  KWFNV  G+GF+  ND  ++VFVHQ+ I         RS+G+ E VEF      +G 
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI----QMSGFRSLGEQEEVEFECQRTSRGL 96

Query: 347 EAARVT 364
           EA RV+
Sbjct: 97  EATRVS 102


>AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding
           protein LIN-28 protein.
          Length = 195

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 29/66 (43%), Positives = 38/66 (57%)
 Frame = +2

Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
           G  KWFNV  G+GF+  ND  ++VFVHQ+ I         RS+G+ E VEF      +G 
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI----QMSGFRSLGEQEEVEFECQRTSRGL 96

Query: 347 EAARVT 364
           EA RV+
Sbjct: 97  EATRVS 102


>AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA
           protein.
          Length = 195

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 29/66 (43%), Positives = 38/66 (57%)
 Frame = +2

Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
           G  KWFNV  G+GF+  ND  ++VFVHQ+ I         RS+G+ E VEF      +G 
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI----QMSGFRSLGEQEEVEFECQRTSRGL 96

Query: 347 EAARVT 364
           EA RV+
Sbjct: 97  EATRVS 102


>AY060441-1|AAL25480.1|  143|Drosophila melanogaster LD47312p
           protein.
          Length = 143

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +2

Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 259
           V+G VK F+   G+GFI  N   EDVF H + I
Sbjct: 55  VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87


>AE014296-2798|AAN11740.1|  143|Drosophila melanogaster CG9705-PB,
           isoform B protein.
          Length = 143

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +2

Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 259
           V+G VK F+   G+GFI  N   EDVF H + I
Sbjct: 55  VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87


>AE014296-2797|AAF49414.1|  143|Drosophila melanogaster CG9705-PA,
           isoform A protein.
          Length = 143

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +2

Query: 161 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 259
           V+G VK F+   G+GFI  N   EDVF H + I
Sbjct: 55  VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87


>AE013599-3457|AAF46894.2| 1227|Drosophila melanogaster CG30268-PA
           protein.
          Length = 1227

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 262 DYRSLMYKHIFFGV-IPIDETISTLDVEPFDSTRNLFS 152
           +YR L Y H F G+ +P D   + + +EP    +NLF+
Sbjct: 599 NYRELYYIHFFSGISLPNDLMYNMMPIEPRRMKKNLFN 636


>BT029686-1|ABL75743.1|  394|Drosophila melanogaster IP17383p
           protein.
          Length = 394

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 198 PLLTLNHLTVPETFSAM 148
           P+LT+N L +P+TF +M
Sbjct: 91  PILTINSLAIPDTFCSM 107


>AY160083-1|AAN77520.1| 1910|Drosophila melanogaster alpha1U protein
           protein.
          Length = 1910

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 198 PLLTLNHLTVPETFSAM 148
           P+LT+N L +P+TF +M
Sbjct: 217 PILTINSLAIPDTFCSM 233


>AE014298-2026|AAF48365.2| 2196|Drosophila melanogaster CG1517-PB,
           isoform B protein.
          Length = 2196

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 198 PLLTLNHLTVPETFSAM 148
           P+LT+N L +P+TF +M
Sbjct: 503 PILTINSLAIPDTFCSM 519


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,930,760
Number of Sequences: 53049
Number of extensions: 189130
Number of successful extensions: 484
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 964005624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)