Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_P04
(370 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 117 2e-27
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 78 2e-15
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 75 2e-14
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 73 9e-14
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 73 9e-14
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 52 1e-07
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 52 1e-07
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 52 1e-07
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 52 1e-07
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 27 3.2
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 27 3.2
U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical pr... 27 3.2
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 27 3.2
U28732-1|AAB04901.2| 540|Caenorhabditis elegans Hypothetical pr... 27 4.2
U23527-3|AAC46573.3| 596|Caenorhabditis elegans Hypothetical pr... 26 9.7
AL132859-3|CAB60491.1| 346|Caenorhabditis elegans Hypothetical ... 26 9.7
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 117 bits (282), Expect = 2e-27
Identities = 54/75 (72%), Positives = 59/75 (78%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 325
V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAII NNP K +RS+GD E V F +
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75
Query: 326 VAGEKGYEAARVTGP 370
V G KG EAA VTGP
Sbjct: 76 VEGSKGLEAASVTGP 90
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 78.2 bits (184), Expect = 2e-15
Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Frame = +2
Query: 149 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK-AVRSVGDGEAVEFAV 325
I + G VKW++V YGFI+RND ++D+FVHQTAI ++ K +R++GD E V F +
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121
Query: 326 VAGEKGYEAARVTGP 370
V G+ G EAA VTGP
Sbjct: 122 VEGKNGPEAANVTGP 136
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 74.9 bits (176), Expect = 2e-14
Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK-AVRSVGDGEAVEFA 322
V+ + G VKW++V YGFI+R+D ++DVFVHQTAI +++ K +R++ D E V F
Sbjct: 59 VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118
Query: 323 VVAGEKGYEAARVTGP 370
+V G+ G EAA VTGP
Sbjct: 119 LVDGKNGPEAANVTGP 134
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 72.5 bits (170), Expect = 9e-14
Identities = 40/79 (50%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIIRNNPRKA-VRSVGDGEAV 313
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 314 EFAVVAGEKGYEAARVTGP 370
F +V G KG EAA VTGP
Sbjct: 144 VFDIVEGLKGPEAANVTGP 162
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 72.5 bits (170), Expect = 9e-14
Identities = 40/79 (50%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Frame = +2
Query: 146 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIIRNNPRKA-VRSVGDGEAV 313
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 314 EFAVVAGEKGYEAARVTGP 370
F +V G KG EAA VTGP
Sbjct: 144 VFDIVEGLKGPEAANVTGP 162
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 52.4 bits (120), Expect = 1e-07
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 340
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79
Query: 341 GYEAARVTG 367
G EA V+G
Sbjct: 80 GREAYAVSG 88
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 52.4 bits (120), Expect = 1e-07
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 340
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 341 GYEAARVTG 367
G EA V+G
Sbjct: 111 GREAYAVSG 119
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 52.4 bits (120), Expect = 1e-07
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 340
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 341 GYEAARVTG 367
G EA V+G
Sbjct: 111 GREAYAVSG 119
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 52.4 bits (120), Expect = 1e-07
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 167 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 340
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 341 GYEAARVTG 367
G EA V+G
Sbjct: 111 GREAYAVSG 119
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 226 GVIPIDETISTLDVEPFDSTRNL 158
G PID++ S++DV+P S+ NL
Sbjct: 1896 GTAPIDDSDSSMDVDPAGSSDNL 1918
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 226 GVIPIDETISTLDVEPFDSTRNL 158
G PID++ S++DV+P S+ NL
Sbjct: 1902 GTAPIDDSDSSMDVDPAGSSDNL 1924
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 226 GVIPIDETISTLDVEPFDSTRNL 158
G PID++ S++DV+P S+ NL
Sbjct: 1902 GTAPIDDSDSSMDVDPAGSSDNL 1924
>U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical
protein R12C12.3 protein.
Length = 340
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 212 NRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
NRN K +F+ +I+ N PR +GDG E ++ EK
Sbjct: 131 NRNTMKAGIFIIIFSIVFNFPRFFDYKIGDGYLSEMWMLDTEK 173
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 226 GVIPIDETISTLDVEPFDSTRNL 158
G PID++ S++DV+P S+ NL
Sbjct: 1902 GTAPIDDSDSSMDVDPAGSSDNL 1924
>U28732-1|AAB04901.2| 540|Caenorhabditis elegans Hypothetical
protein F45E1.5 protein.
Length = 540
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +2
Query: 176 KWFNVKSGYGFINRNDTKEDVFVHQTAII---RNNPRKAVRSVGDGEAVEFAVVAGEKGY 346
+W NVK+ ++ ++ + +F+ II RN A R + +E A + G GY
Sbjct: 230 QWLNVKTDINSVSLENSDDSIFMQMFNIISHERNRRWYAYRREHESLTLEEAYLIGNGGY 289
>U23527-3|AAC46573.3| 596|Caenorhabditis elegans Hypothetical
protein K09E2.2 protein.
Length = 596
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 233 DVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 340
D+FV + + RK V G +E A+ +GEK
Sbjct: 216 DIFVENKLVTKKKLRKKVVKKGLTNTIELALKSGEK 251
>AL132859-3|CAB60491.1| 346|Caenorhabditis elegans Hypothetical
protein Y39C12A.6 protein.
Length = 346
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 268 VSDYRSLMYKHIFFGVIPIDETISTLDVEPFDSTRNLFS 152
+ DY +I +G+I + IS L F+ST +F+
Sbjct: 128 IKDYEQKQRHYIAYGIIALMTFISMLTAYVFNSTNLIFA 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,563,189
Number of Sequences: 27780
Number of extensions: 96904
Number of successful extensions: 240
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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