Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P03
         (154 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.04c |coq2|ppt1|para-hydroxybenzoate--polyprenyltransfer...    25   1.0  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   3.1  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    23   7.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        22   9.5  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    22   9.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    22   9.5  

>SPAC56F8.04c
           |coq2|ppt1|para-hydroxybenzoate--
           polyprenyltransferaseCoq2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 66  WDIIEILYFDVGIFAVLYDIVYGQQ 140
           W ++  LY     + VLYD +Y  Q
Sbjct: 227 WSVVAPLYLSTISWIVLYDTIYAHQ 251


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 110 GEDADVKIQDFDDVPEDED 54
           G D +V+ +D DD  EDED
Sbjct: 198 GNDDEVEEEDDDDDDEDED 216


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 98  DVKIQDFDDVPEDED 54
           DV   + DD+PED++
Sbjct: 294 DVDFTEVDDIPEDDE 308


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 104  DADVKIQDFDDVPEDED 54
            D D++  DF D+ ED++
Sbjct: 4142 DEDIQQDDFSDLAEDDE 4158


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 47  INRLHPLGHHRNLVF*RRHLRR 112
           INR+H L  H+NL+  ++  R+
Sbjct: 605 INRIHDLLSHKNLLSLKKFSRQ 626


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 124 ISYSTAKMPTSKYKISMMSQRMKTVDN 44
           +SYS   + T ++  ++ SQR  T+D+
Sbjct: 675 LSYSIIMLNTDQHNPNIKSQRRMTLDD 701


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,725
Number of Sequences: 5004
Number of extensions: 7139
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)