Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P03
         (154 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0911 + 28697654-28697698,28698170-28698278,28698352-286984...    33   0.024
03_02_0933 - 12505196-12505286,12505759-12505814,12508780-125088...    31   0.096
05_01_0372 - 2913518-2916562,2916674-2917528                           25   6.3  

>03_05_0911 +
           28697654-28697698,28698170-28698278,28698352-28698433,
           28698486-28698514,28699472-28699567,28699860-28699963,
           28700071-28700201,28700276-28700369,28701666-28701721,
           28702728-28702821
          Length = 279

 Score = 33.5 bits (73), Expect = 0.024
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = -3

Query: 116 QYGEDADVKIQDFDDVPEDE 57
           QYGEDADVK++DFD  PE++
Sbjct: 262 QYGEDADVKVRDFD--PEED 279


>03_02_0933 -
           12505196-12505286,12505759-12505814,12508780-12508873,
           12508949-12509079,12509187-12509290,12509585-12509680,
           12510752-12510860,12511252-12511296
          Length = 241

 Score = 31.5 bits (68), Expect = 0.096
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = -3

Query: 116 QYGEDADVKIQDFDDVPED 60
           QYG DADVK++DFD  PED
Sbjct: 225 QYGVDADVKVRDFD--PED 241


>05_01_0372 - 2913518-2916562,2916674-2917528
          Length = 1299

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 104 DADVKIQDFDDVPEDED 54
           D+D+ + D+ D+ +DED
Sbjct: 924 DSDIDLDDYSDIEQDED 940


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,036
Number of Sequences: 37544
Number of extensions: 37637
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 14,793,348
effective HSP length: 31
effective length of database: 13,629,484
effective search space used: 258960196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)