Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P03
         (154 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U67948-4|AAM51500.1|  688|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z66516-4|CAA91359.2|  500|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical
           protein C09G5.8 protein.
          Length = 1531

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 110 GEDADVKIQDFDDVPEDEDG**LNVIFHKKKKKK 9
           GE  D ++++  ++ +DE G    VI  KKK ++
Sbjct: 400 GEGKDSELEEMSEMSDDESGRSTPVIEEKKKPRR 433


>Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical
           protein C09G5.8 protein.
          Length = 1531

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 110 GEDADVKIQDFDDVPEDEDG**LNVIFHKKKKKK 9
           GE  D ++++  ++ +DE G    VI  KKK ++
Sbjct: 400 GEGKDSELEEMSEMSDDESGRSTPVIEEKKKPRR 433


>U67948-4|AAM51500.1|  688|Caenorhabditis elegans Hypothetical
           protein M02E1.1b protein.
          Length = 688

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 45  LSTVFILWDIIEILYFDVGIFAVLYDIVYGQQYIIY 152
           L  + ++W++I+ +YF++  F V  D    +   +Y
Sbjct: 79  LKLILLMWEVIKKVYFNLTTFQVEIDEALEKSCCLY 114


>U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical
           protein M02E1.1a protein.
          Length = 1077

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 45  LSTVFILWDIIEILYFDVGIFAVLYDIVYGQQYIIY 152
           L  + ++W++I+ +YF++  F V  D    +   +Y
Sbjct: 79  LKLILLMWEVIKKVYFNLTTFQVEIDEALEKSCCLY 114


>Z66516-4|CAA91359.2|  500|Caenorhabditis elegans Hypothetical
          protein W03C9.6 protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 83 DFDDVPEDEDG 51
          DFDDVP  EDG
Sbjct: 22 DFDDVPSKEDG 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,852
Number of Sequences: 27780
Number of extensions: 38649
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 12,740,198
effective HSP length: 31
effective length of database: 11,879,018
effective search space used: 225701342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)