Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_P01
(146 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 28 0.15
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 26 0.78
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 0.78
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 25 1.0
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 25 1.4
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch... 25 1.8
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 24 2.4
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 24 2.4
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 24 3.1
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 24 3.1
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 23 4.1
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 23 4.1
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 23 5.5
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 23 5.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 23 7.2
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 23 7.2
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 23 7.2
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 23 7.2
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 22 9.6
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 22 9.6
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 28.3 bits (60), Expect = 0.15
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 4 RGCNRRRKKTAIAEERRLQSPKKEDCNRRRK--KTAIAEERRLQSPK 138
R R +K E +RL+ KE+ ++K K AEE+RLQ +
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKER 754
Score = 26.2 bits (55), Expect = 0.59
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 6 RLQSPKKEDRNRRRK--KTAIAEERRLQSPKKEDCNRRRKKTAIAEE 140
RL+ KE++ ++K K AEE+RLQ + + + +++A A++
Sbjct: 724 RLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYAKQMSRESAHADQ 770
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +1
Query: 16 RRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEE 117
++ +K AEE+RLQ + + + +++A A++
Sbjct: 737 KKEEKARKAEEKRLQKERAKYAKQMSRESAHADQ 770
>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
Etp1/ cytochrome oxidase cofactor Cox15,
fusion|Schizosaccharomyces pombe|chr 1|||Manual
Length = 631
Score = 25.8 bits (54), Expect = 0.78
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 138 LRRLQSSFFGDCSLLSSAIAVFFLRRLQSS 49
L R ++ F DC ++ FF RRL +S
Sbjct: 49 LSRTKNLFLNDCKFNKNSFEKFFARRLSNS 78
Score = 25.0 bits (52), Expect = 1.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 116 SSAIAVFFLRRLQSSFFGDCSLLSSAIAVFFLRRL 12
SS + L R ++ F DC ++ FF RRL
Sbjct: 41 SSVLNEINLSRTKNLFLNDCKFNKNSFEKFFARRL 75
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 0.78
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +1
Query: 13 NRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKE 144
+++RK +E+ ++ KKE+ +RRKK A +E++ + KKE
Sbjct: 425 SKKRKSVESSEKDEDEAAKKEE--KRRKKEA-KKEKKEKKEKKE 465
Score = 25.0 bits (52), Expect = 1.4
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +2
Query: 17 AEERRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDCNRRRK 142
+E+ ++ KKE+ +RRKK A +E++ + KKE +++K
Sbjct: 434 SEKDEDEAAKKEE--KRRKKEA-KKEKKEKKEKKEKKEKKKK 472
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 12 QSPKKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRK 119
++ KKE+ +RRKK A +E++ + KKE +++K
Sbjct: 440 EAAKKEE--KRRKKEA-KKEKKEKKEKKEKKEKKKK 472
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 1.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 128 CSLLSSAIAVFFLRRLQSSFFGDCSLLSSAIAVFFLRR 15
CSLLS AI+V + SS LS + +FF R
Sbjct: 177 CSLLSFAISVLGRNKAPSSLPFALGNLSEKVTIFFTLR 214
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 131 DCSLLSSAIAVFFLRRLQSSFFGDCSLLSS 42
DC + S + FF+ + Q F D +LL+S
Sbjct: 368 DCFISSESFQSFFILQKQFQLFQDLALLTS 397
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 108 DCSLLSSAIAVFFLRRLQSSFFGDCGLLSS 19
DC + S + FF+ + Q F D LL+S
Sbjct: 368 DCFISSESFQSFFILQKQFQLFQDLALLTS 397
>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 43 EERRLQSPKKEDCNRRRKKTAIAEERRLQS 132
EE+ L KEDC +K + + LQS
Sbjct: 66 EEKELPKDIKEDCKTVEEKEKVVPRKPLQS 95
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 14 IAEERRPQSPKKEDCNRRRKKT 79
+A+ RP P D NRRR+K+
Sbjct: 79 LAQYFRPAPPHPNDRNRRRRKS 100
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = +3
Query: 21 KKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKK 122
KKE ++++ KK ++++R E+ + +KK
Sbjct: 460 KKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKK 493
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +2
Query: 44 KKEDCNRRRKKTAIAEERRLQSPKKEDCNRRRKK 145
KKE +++ KK ++++R E+ + +KK
Sbjct: 460 KKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKK 493
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 23.8 bits (49), Expect = 3.1
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 33 RNRRRKKTAIAEERRLQSPKKE-DCNRRRKK 122
R+R R+ A AEE RL K+E + +++KK
Sbjct: 277 RDRERQAFARAEEERLAKEKEEREIVQKKKK 307
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 11 AIAEERRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDCNRRRK 142
A E + + +K+D ++ K E +SPKK+ +++ K
Sbjct: 464 ADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKSKKSK 507
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/39 (23%), Positives = 22/39 (56%)
Frame = +3
Query: 3 TRLQSPKKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRK 119
++ + +K+D+ ++ K E +SPKK+ +++ K
Sbjct: 469 SKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKSKKSK 507
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 28 KTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKE 144
K A E + + +K+D ++ K E +SPKK+
Sbjct: 462 KEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKK 500
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 24 KEDRNRRRKKTAIAEER-RLQSPKKEDCNRRRKK 122
+E R R ++ I EER R + KE+ RRR++
Sbjct: 689 REQRLREEEEKRILEERKRREKLDKEEEERRRRE 722
Score = 23.4 bits (48), Expect = 4.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 27 EDRNRRRKKTAIAEERR---LQSPKKEDCNRRRKKTAIA 134
E+R RR K EERR L + E+ RR ++ IA
Sbjct: 703 EERKRREKLDKEEEERRRRELLEKESEEKERRLREAKIA 741
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +2
Query: 20 EERRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDCNRRRKK 145
E R + +++ +K + E +R + KE+ RRR++
Sbjct: 681 EADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRRRE 722
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 26 RRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDCNRRRK 142
R P + + R + T I E+ L+ P EDC RK
Sbjct: 53 REPGLGYDSEASDREEDTYIEEQIILRLPPGEDCEYVRK 91
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 20 EERRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDCNRRRK 142
+ER+ ++ KKE + +KK E + P +E +R++
Sbjct: 287 KERKKRAEKKEQ-QKEKKKEKEKERMKAFIPPEESSKKRKR 326
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +3
Query: 24 KEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEERR 146
+++R R +++ EER + +KE+ R R++ + +ER+
Sbjct: 131 EKERIRLQEQQRRKEERDQKLREKEEAQRLRQEQILNKERQ 171
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 22.6 bits (46), Expect = 7.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 2 HEAAIAEERRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDCNRRR 139
H+ E RP+S K + +R K ++++ + KKED R R
Sbjct: 597 HKRDSKHEARPES--KHESHRESKSAE--KDKKDKKDKKEDSKRSR 638
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 21 KKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAI 131
KK R+R T + +R+ + KKE + +K+ +I
Sbjct: 433 KKSPPKRKRITTRASYDRQKEQRKKEYIKKVKKEASI 469
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/39 (23%), Positives = 21/39 (53%)
Frame = +2
Query: 20 EERRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDCNRR 136
EER + + ++ +R + +RR+Q + E+ +R+
Sbjct: 821 EERTRAAREAKEREQREMAEKLERQRRIQQERDEEISRK 859
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 23 ERRPQSPKKEDCNRRRKKTA 82
E PQ PKK+ +RR +K +
Sbjct: 100 EMVPQKPKKKKRSRRNRKAS 119
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 22.2 bits (45), Expect = 9.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 27 EDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEER 143
E R RRR + E RRL +++D +K+ A R
Sbjct: 6 ESRKRRRLIHSEKETRRLDLGEEDDLELFQKEAAWRRSR 44
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 22.2 bits (45), Expect = 9.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 3 TRLQSPKKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEE 140
T +PKK D+ + +TA R + K+D RK + EE
Sbjct: 136 TENSAPKKTDKEKSSGETAGNILREQIATGKDDDEYARKFEEVEEE 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.125 0.344
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,157
Number of Sequences: 5004
Number of extensions: 8865
Number of successful extensions: 68
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 29
effective length of database: 2,217,362
effective search space used: 42129878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -