Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P01
         (146 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   0.74 
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   0.74 
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   1.3  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    23   1.7  
AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription fact...    21   4.0  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    21   6.9  
CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.          20   9.1  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    20   9.1  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 22  RKKTAIAEERRLQSPKKEDCNRRRKKTAIAEE 117
           +++TA+ EE       KED NR + +  +AEE
Sbjct: 159 KERTALFEEISGSGLLKEDYNRLKHEMQMAEE 190



 Score = 23.8 bits (49), Expect = 0.74
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 45  RKKTAIAEERRLQSPKKEDCNRRRKKTAIAEE 140
           +++TA+ EE       KED NR + +  +AEE
Sbjct: 159 KERTALFEEISGSGLLKEDYNRLKHEMQMAEE 190



 Score = 21.4 bits (43), Expect = 4.0
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 11  AIAEERRPQSPKKEDCNRRRKKTAIAEER-RLQSPKKEDCNRRRKK 145
           A+ EE       KED NR + +  +AEE  +    KK      RK+
Sbjct: 163 ALFEEISGSGLLKEDYNRLKHEMQMAEEETQFTYQKKRGIAAERKE 208



 Score = 21.4 bits (43), Expect = 4.0
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 24  KEDRNRRRKKTAIAEER-RLQSPKKEDCNRRRKKTAIAEE 140
           KED NR + +  +AEE  +    KK      RK+  + ++
Sbjct: 175 KEDYNRLKHEMQMAEEETQFTYQKKRGIAAERKEARLEKQ 214


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +3

Query: 21  KKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEER 143
           ++E+R R  ++ AI  E+  +  ++ +  +R K+    E+R
Sbjct: 453 REEERAREAREAAIEREKERELREQREREQREKEQREKEQR 493



 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = +2

Query: 2   HEAAIAEERRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDCNRRRKK 145
           H AA   E       +E    R K+  + E+R  +  +KE   + +++
Sbjct: 447 HRAARLREEERAREAREAAIEREKERELREQREREQREKEQREKEQRE 494



 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/42 (19%), Positives = 23/42 (54%)
 Frame = +2

Query: 20  EERRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDCNRRRKK 145
           E+R  +  +KE+  R++++    E  + +  ++ +  R R++
Sbjct: 486 EQREKEQREKEERERQQREKEQREREQREKEREREAARERER 527



 Score = 22.2 bits (45), Expect = 2.3
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +2

Query: 5   EAAIAEE-----RRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDCNRRRKK 145
           EAAI  E     R  +  ++ +  +R K+    EER  Q  +KE   R +++
Sbjct: 463 EAAIEREKERELREQREREQREKEQREKEQREKEERERQQREKEQREREQRE 514


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 37  IAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKE 144
           IAE+R+L SP   D +   ++   A +  +++ KK+
Sbjct: 310 IAEQRQLASPTDPDISALDRQARHALKTAIRASKKQ 345



 Score = 22.6 bits (46), Expect = 1.7
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +2

Query: 2   HEAAIAEERRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDCNR 133
           +E  IAE+R+  SP   D +   ++   A +  +++ KK+  +R
Sbjct: 306 NECRIAEQRQLASPTDPDISALDRQARHALKTAIRASKKQFFDR 349


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 12  QSPKKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAI 131
           ++  + ++NRR K     +E     P   +  RR  KTA+
Sbjct: 225 EARNRAEKNRRDKLNGSIQELSAMVPHVAESPRRVDKTAV 264


>AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription factor
           protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 1   ARGCNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEER 120
           A+G ++RRK   + +  R  +PKK+   + ++  A AE +
Sbjct: 76  AKG-SKRRKVGTVTKAYREPAPKKQAPAKAKEPKAKAERQ 114



 Score = 21.0 bits (42), Expect = 5.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 36  NRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEER 143
           ++RRK   + +  R  +PKK+   + ++  A AE +
Sbjct: 79  SKRRKVGTVTKAYREPAPKKQAPAKAKEPKAKAERQ 114


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1168

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 26   RRPQSPKKEDCNRRRKKTAIAEERR 100
            R P SP+  +  RRR+     + RR
Sbjct: 1115 RLPPSPRTTEMRRRRRNYMQLQYRR 1139


>CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.
          Length = 1494

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 14  IAEERRPQSPKKEDCNRRRKKTAIAE 91
           I      Q P++ED   R   TA+++
Sbjct: 679 IKRSHSAQLPQREDARSRTPLTAVSD 704



 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 37  IAEERRLQSPKKEDCNRRRKKTAIAE 114
           I      Q P++ED   R   TA+++
Sbjct: 679 IKRSHSAQLPQREDARSRTPLTAVSD 704



 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 60  IAEERRLQSPKKEDCNRRRKKTAIAE 137
           I      Q P++ED   R   TA+++
Sbjct: 679 IKRSHSAQLPQREDARSRTPLTAVSD 704


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +2

Query: 47  KEDCNRRRKKTAIAEERRLQSPKKEDCN 130
           K DC      T  +   R  S K E+C+
Sbjct: 214 KRDCPMESNNTPTSTTMRDYSRKNENCS 241


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.313    0.125    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,514
Number of Sequences: 2352
Number of extensions: 1758
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 28
effective length of database: 498,123
effective search space used:  9962460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)