Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O24
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical ...    29   1.1  
AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical ...    29   1.1  
U41266-1|AAM48565.1|  521|Caenorhabditis elegans Zinc metallopro...    27   5.8  
U40942-6|AAP68937.1|  709|Caenorhabditis elegans High temperatur...    27   5.8  
U40942-5|AAC47068.1|  729|Caenorhabditis elegans High temperatur...    27   5.8  
AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.      27   5.8  
AB007817-1|BAA28353.1|  521|Caenorhabditis elegans matrix metall...    27   5.8  

>AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y59H11AR.2b protein.
          Length = 1111

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 74  DIDCLVEGHSAYCTCNLYYRN 12
           D+  +V+ H+ Y  CN+YYRN
Sbjct: 87  DLVLVVDNHNRYDICNVYYRN 107


>AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical
           protein Y59H11AR.2a protein.
          Length = 1127

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 74  DIDCLVEGHSAYCTCNLYYRN 12
           D+  +V+ H+ Y  CN+YYRN
Sbjct: 103 DLVLVVDNHNRYDICNVYYRN 123


>U41266-1|AAM48565.1|  521|Caenorhabditis elegans Zinc
           metalloprotease protein 1 protein.
          Length = 521

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 149 SFD*RPSQCMTSQPIVLDYKM*YLL 223
           S D RP++C    PIV+ Y+  YL+
Sbjct: 293 SDDIRPNECRVENPIVVQYRGEYLI 317


>U40942-6|AAP68937.1|  709|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform b
           protein.
          Length = 709

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 374 ILKRRYRTNSRFSHWARLY 430
           I+ RRY+TN   +HW R+Y
Sbjct: 683 IVIRRYQTNIGTNHWFRIY 701


>U40942-5|AAC47068.1|  729|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform a
           protein.
          Length = 729

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 374 ILKRRYRTNSRFSHWARLY 430
           I+ RRY+TN   +HW R+Y
Sbjct: 683 IVIRRYQTNIGTNHWFRIY 701


>AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.
          Length = 729

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 374 ILKRRYRTNSRFSHWARLY 430
           I+ RRY+TN   +HW R+Y
Sbjct: 683 IVIRRYQTNIGTNHWFRIY 701


>AB007817-1|BAA28353.1|  521|Caenorhabditis elegans matrix
           metalloproteinase protein.
          Length = 521

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 149 SFD*RPSQCMTSQPIVLDYKM*YLL 223
           S D RP++C    PIV+ Y+  YL+
Sbjct: 293 SDDIRPNECRVENPIVVQYRGEYLI 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,958,213
Number of Sequences: 27780
Number of extensions: 194543
Number of successful extensions: 301
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)