Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_O23
(324 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 29 0.84
12_02_0119 + 13886982-13887323 27 3.4
04_01_0501 - 6558120-6559312,6559441-6559518,6559818-6559877,656... 27 3.4
12_02_0281 + 16744690-16744727,16744744-16745611,16746195-167467... 27 4.5
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 27 4.5
01_05_0401 - 21801454-21801888 27 4.5
09_06_0353 + 22489265-22490401 26 5.9
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 26 5.9
02_01_0453 + 3255106-3256062,3256140-3256301,3256394-3256762 26 7.8
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 29.1 bits (62), Expect = 0.84
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +2
Query: 71 TVVANDEPTASEIVGLIEKTFENSDVIKLKVNKQIMKED 187
T+VA ASE V I +F N D IK KQI K D
Sbjct: 65 TLVARTTSAASEEVNSIHFSFYNDDEIKRISVKQITKSD 103
>12_02_0119 + 13886982-13887323
Length = 113
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 73 GGGQRRTHGFRDRW 114
GGGQRR+ G R RW
Sbjct: 72 GGGQRRSGGLRRRW 85
>04_01_0501 -
6558120-6559312,6559441-6559518,6559818-6559877,
6560000-6560083,6560407-6560566
Length = 524
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 154 LYYIGILKSLLNKPNDLGSRGFVVGHHRQL 65
L Y+ + N PN+ GSRG GH ++
Sbjct: 39 LLYLMVNAQFSNSPNEDGSRGLEEGHREEV 68
>12_02_0281 +
16744690-16744727,16744744-16745611,16746195-16746725,
16747737-16748549
Length = 749
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +2
Query: 146 VIKLKVNKQIMKEDLHRILVSVA-DEHEALEEVAKHY--DLKKHNTFYVVQRIPLF 304
V+ + + +++ + D +R L + DE + + K D+K+H +V+R+PLF
Sbjct: 473 VLPVDLQERVWRHDQYRWLETRGVDEDSLVRSLPKDLRRDVKRHLCLRLVRRVPLF 528
>04_04_0706 + 27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +2
Query: 20 EKISSFDPLSHAVATELTVVANDEPTASEIVGLIEKTFENSDVIKLKVNKQIMKEDLHRI 199
++I + L+H + + +PTAS +V L++ F DVI+ Q + + L ++
Sbjct: 1134 KRIKRKEDLNHDIFKNFDDLFGVKPTASVLVSLLDVLFLKKDVIQRTCLLQPLFQLLSKL 1193
Query: 200 L 202
L
Sbjct: 1194 L 1194
>01_05_0401 - 21801454-21801888
Length = 144
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 37 RSSLPRRSDRADGGGQR-RTHGFR 105
RSS P+R ADGGG R R+ G+R
Sbjct: 38 RSSWPQRRLEADGGGPRGRSAGWR 61
>09_06_0353 + 22489265-22490401
Length = 378
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -2
Query: 209 PIPECGAGLPSLSVYSLLTLLHRNXXXXXXXXXXXXKPWVRRWPPPSALSLRRG 48
P PE G+P S Y LLT+L ++ W P P A+ + G
Sbjct: 226 PEPELTLGMPPHSDYGLLTILLQDEVRGLEVSYGDGGGWAVVEPLPGAVVVNVG 279
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 209 VADEHEALEEVAKHYDLKKHNTFYVVQRIPLFQDAWL 319
+ + +AL V KH+D+K + R + ++WL
Sbjct: 2758 IPSDDDALSLVYKHFDMKHEAASLLESRAEQYMNSWL 2794
>02_01_0453 + 3255106-3256062,3256140-3256301,3256394-3256762
Length = 495
Score = 25.8 bits (54), Expect = 7.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 95 WVRRWPPPSALSLR 54
W +RWP PS+L +R
Sbjct: 57 WEQRWPDPSSLDVR 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,253,187
Number of Sequences: 37544
Number of extensions: 173607
Number of successful extensions: 639
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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