Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_O22
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.17
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 29 0.23
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 26 1.2
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 1.6
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 2.1
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 2.1
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 24 4.8
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 24 4.8
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 24 4.8
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c... 24 4.8
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe... 24 6.4
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 29.1 bits (62), Expect = 0.17
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 155 VQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHAC--LNP 6
V+R + SGS+ G S SA A S SLA + P+ A C LNP
Sbjct: 123 VRRLRTSGSSTGLSNAPPSANVSKASSNLSLASLAKTQPERATPEVCVPLNP 174
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 0.23
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 118 LPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADI 225
+ V D C+R D+ +P I +YQ +P + AD+
Sbjct: 77 MATVSEDKCLRLWDSTQPDKIELLYQKNIPKRCADL 112
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 26.2 bits (55), Expect = 1.2
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Frame = -3
Query: 311 SLSTNCVISGITXXXXXXXXXXXXSKETTISACLFGT---LS**TSPMA*GL-SASVQRT 144
+++TN V + I+ S TT S+ + +S +S M+ SAS
Sbjct: 412 TINTNIVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSA 471
Query: 143 QASGSTAGSSPVRASAA-YPLARSQAWCKSLAAS 45
+SGS++GSS +SA+ + L+R + LA S
Sbjct: 472 HSSGSSSGSSSATSSASTFNLSRFYVFAGILAIS 505
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.8 bits (54), Expect = 1.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 167 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASV 42
L S +R + ++ PVR S A R +W + LAA++
Sbjct: 627 LPNSKKRFSSFSGSSSKLPVRPSTALTDKRKPSWSRRLAAAI 668
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 2.1
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -2
Query: 207 WHFELINVSDGVRLVRVGAAHASVRQ 130
W +LIN++DG+ +++ H+ Q
Sbjct: 798 WSGDLINIADGIHEIKLQRVHSQDHQ 823
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 2.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 134 GSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTA 30
GS + PV+ S YP+A Q S+ +V DT+
Sbjct: 285 GSHNSAKPVQRSHTYPVAVPQNTSDSVGNAVTDTS 319
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 24.2 bits (50), Expect = 4.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 184 DVYQLKVPNKQADIVVSFETTQSNEQSCKELVM 282
+ +L P ++ DI++ E Q++E S LVM
Sbjct: 532 EALRLHKPLEELDIILQSEEIQNSETSAVRLVM 564
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 24.2 bits (50), Expect = 4.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 85 RGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADIV 228
RG+ +AL ++ A++ A R + P +GD+ L V + DIV
Sbjct: 455 RGWLLVALLEIIHALMLAAFCRDKGFEVPSDLGDI-TLYVQERMVDIV 501
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 24.2 bits (50), Expect = 4.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 182 ETFINSKCQTSKQILSSPSKLLRVT 256
ETFIN Q K + + PS+L+R++
Sbjct: 637 ETFINLTIQDQKLLGTFPSQLVRLS 661
>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
catalytic subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 24.2 bits (50), Expect = 4.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 220 DIVVSFETTQSNEQSCKELV-MPLITQLVDKLKS 318
D+VVS + + S + CK ++ MP T VD S
Sbjct: 64 DVVVSAKPSDSKQHVCKRIIGMPGDTIYVDPTSS 97
>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 139
Score = 23.8 bits (49), Expect = 6.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 192 STQSAKQASRYCRLLRNYS 248
S+Q K+ S+YCR RN++
Sbjct: 114 SSQVFKELSKYCRSQRNHT 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,146,080
Number of Sequences: 5004
Number of extensions: 17670
Number of successful extensions: 74
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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