Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O19
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...   184   3e-47
U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symme...    27   7.2  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   9.5  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   9.5  
AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score =  184 bits (448), Expect = 3e-47
 Identities = 86/127 (67%), Positives = 101/127 (79%)
 Frame = +1

Query: 70  GVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKT 249
           GVDLDQLLDM  EQ  +L+          GLKRK +AL+ K+++AKK A   EKP  VKT
Sbjct: 25  GVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKKAAGVLEKPATVKT 84

Query: 250 HLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHS 429
           HLR+MII+PE+VG ++GIYNGK FNQ EIKPEMIG YLGEF+++YKPVKHGRPGIGATHS
Sbjct: 85  HLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPGIGATHS 144

Query: 430 SRFIPLK 450
           SRFIPLK
Sbjct: 145 SRFIPLK 151


>U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symmetry
           protein 1 protein.
          Length = 1425

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 243 ENTFKKHDHCS*NGGINCWHLQWKNI*PG*NQARDDRSL 359
           EN+ +K  H S   GI+ WH    NI       RDDR L
Sbjct: 565 ENSQQKKIHQSELRGIHRWHFARNNIKAVTESKRDDRQL 603


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 205   KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIY 306
             K+  P +E  EIV     + +I+ E+ G  VG+Y
Sbjct: 14489 KEIIPTDENTEIVNEGSMSALIIHELAGEDVGLY 14522


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 205   KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIY 306
             K+  P +E  EIV     + +I+ E+ G  VG+Y
Sbjct: 14489 KEIIPTDENTEIVNEGSMSALIIHELAGEDVGLY 14522


>AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical
           protein Y51A2B.6 protein.
          Length = 781

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 166 RKPMALVKKLRRAKKEAPPNEK--PEIVKTHLRNMIIVPEMVGSIVGIYNGKTF 321
           +K + +++K+R   K++  N +  P +V   L+N+  V E+   +    N KTF
Sbjct: 560 QKVIQVIQKMRNLDKDSVQNIQGIPSVVSEFLKNLAKVREISDKMKENSNNKTF 613


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,323,209
Number of Sequences: 27780
Number of extensions: 230340
Number of successful extensions: 468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)