Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O18
         (219 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   1.8  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   1.8  
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa...    25   1.8  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    24   3.1  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    23   5.5  
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    23   5.5  
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce...    23   5.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    23   7.2  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    22   9.6  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    22   9.6  

>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 108 YLGHNIIGPFHGRGPVGSPQG 46
           Y GH IIGPF     +  P G
Sbjct: 15  YRGHQIIGPFEDFTSIIGPNG 35


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 108 YLGHNIIGPFHGRGPVGSPQGRRGLPSS 25
           Y+  +   P HG  PV SP  R+ LP+S
Sbjct: 66  YISPSSQSPHHG--PVRSPSSRKPLPAS 91


>SPBP19A11.01 |||glycine decarboxylase complex subunit
          H|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 169

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 83 HFTDEARWVRRRGDAG 36
          HFT E  WV+  GD G
Sbjct: 46 HFTKEHEWVKVDGDVG 61


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 129 KITDLFIYLGHNIIGPFH 76
           ++T+   Y G  I+GPFH
Sbjct: 130 RLTNFKSYAGTQIVGPFH 147


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 74  DEARWVRRRGDAGCPRPNSCS 12
           D A +V R    G P P+ CS
Sbjct: 483 DAASYVSRMATQGFPHPSECS 503


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 90  IGPFHGRGPVGSPQGRRGLPSS 25
           IG +  RGPV  P+ +   PS+
Sbjct: 55  IGVYECRGPVQGPKDQTSFPSN 76


>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 168

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 132 GRNMSMVNFSEFTFIFIVYLDILYVR 209
           G  +  +NFS +T    +YL+ LYVR
Sbjct: 68  GMAIYFLNFSTWTSRVGIYLEDLYVR 93


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 1   VVPGLQEFGRGQPASPLRRTH 63
           VV    E   GQP++PL R H
Sbjct: 439 VVNARVEKSTGQPSTPLNRQH 459


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 147 STYSFHKITDLFIYLGHNIIGPF 79
           S +SF  I ++FI LG+ I G +
Sbjct: 98  SLHSFEDIHEIFISLGNYIEGVY 120


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 34  QPASPLRRTHRASSVKW 84
           +P + +R T RASSV W
Sbjct: 330 EPFALIRTTARASSVAW 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 967,533
Number of Sequences: 5004
Number of extensions: 17486
Number of successful extensions: 38
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)