Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_O18
(219 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0045 + 20462866-20463309,20463417-20463722,20465262-204654... 28 1.2
07_01_0721 - 5517503-5517709,5517761-5517883,5518385-5518627 26 3.6
04_03_0203 + 12640502-12641074 26 3.6
02_01_0283 + 1903869-1904786 26 4.7
10_08_0100 + 14788426-14789097 25 6.3
09_03_0067 - 12035991-12036389,12036928-12037071,12037917-120379... 25 6.3
05_06_0218 + 26475951-26476252,26476361-26476522,26476769-26476970 25 6.3
03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047 25 6.3
01_05_0534 + 22999876-23000333,23000835-23000949 25 6.3
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405... 25 8.3
05_04_0325 + 20289666-20289675,20290137-20290382,20291241-202914... 25 8.3
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142... 25 8.3
03_05_0306 - 22956474-22956980 25 8.3
>09_06_0045 +
20462866-20463309,20463417-20463722,20465262-20465423,
20465539-20465814,20466149-20466499
Length = 512
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 10 GLQEFGRGQPASPLRRTHRASSVKW-PDYIM 99
G+ EFG P P R H A +V+W DY++
Sbjct: 113 GVVEFGDAMP--PAERAHAADAVRWATDYLL 141
>07_01_0721 - 5517503-5517709,5517761-5517883,5518385-5518627
Length = 190
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 14 CRNSDEGSPRRPCGEPTG 67
CR G P R CG PTG
Sbjct: 65 CRRLANGRPTRACGLPTG 82
>04_03_0203 + 12640502-12641074
Length = 190
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 89 SGHFTDEARWVRRRGDAGCPRPNSC 15
S H+ + ARW R GD+ P C
Sbjct: 113 SAHWAEGARWYDRDGDSCAAPPGRC 137
>02_01_0283 + 1903869-1904786
Length = 305
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 113 NKSVILWKEYVDGEF 157
N +V LWKE VDGE+
Sbjct: 283 NDNVTLWKEAVDGEW 297
>10_08_0100 + 14788426-14789097
Length = 223
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Frame = +2
Query: 11 GCRNSD---EGSPRRPCGEPTGPR 73
GCR ++ E PRRP P PR
Sbjct: 166 GCRTAEAAPESRPRRPAPSPASPR 189
>09_03_0067 -
12035991-12036389,12036928-12037071,12037917-12037946,
12039881-12040159
Length = 283
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 108 YLGHNIIGPFHGRGPVGSPQGRRGLPSSEFLQPGD 4
YLG + I GP P R P+ LQPGD
Sbjct: 124 YLGSSAIDGHIILGPATRPMARYFGPTQASLQPGD 158
>05_06_0218 + 26475951-26476252,26476361-26476522,26476769-26476970
Length = 221
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 94 YNRAISRTRPGGFAAGATRAALVRIPA 14
+N A + P G AA ATR+A +PA
Sbjct: 83 FNGAPTAALPDGAAANATRSAAEAVPA 109
>03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047
Length = 368
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 102 GHNIIGPFHGRGPVGSPQGRRG 37
G+ ++G GPV PQGRRG
Sbjct: 104 GNLLLGQQIRGGPVAPPQGRRG 125
>01_05_0534 + 22999876-23000333,23000835-23000949
Length = 190
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 29 EGSPRRPCGEPTGPRP 76
EG+PRRP P P P
Sbjct: 43 EGAPRRPAAPPLSPPP 58
>12_02_0786 +
23139854-23139901,23140054-23140122,23140531-23140544,
23140603-23140675,23140875-23140979,23141817-23142080,
23142159-23142251,23142381-23142587,23143155-23143258,
23143436-23143502,23143576-23143683,23143943-23144033,
23144123-23144193,23144421-23144549,23144659-23144766
Length = 516
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/22 (31%), Positives = 15/22 (68%)
Frame = -2
Query: 83 HFTDEARWVRRRGDAGCPRPNS 18
++TDE RW++ + + G R ++
Sbjct: 265 YYTDELRWIKSKSEIGLMRESA 286
>05_04_0325 +
20289666-20289675,20290137-20290382,20291241-20291436,
20291517-20291776,20291934-20292061,20292447-20292650,
20292780-20292830,20292961-20293227
Length = 453
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 82 ISRTRPGGFAAGATRAALVRIPAARGP 2
+SR P +A GAT+ ++I AA P
Sbjct: 97 VSRVEPTQYAHGATQLMAIQIDAAINP 123
>04_04_1500 +
34010819-34011016,34013267-34013308,34014195-34014204,
34014526-34014586,34014621-34014678,34015266-34015412,
34015643-34016205,34018942-34019728
Length = 621
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 126 ITDLFIYLGHNIIGPFHGRGPVGSPQGRRGLPSSEF 19
I D I H+I+G G SP+ R LP S F
Sbjct: 35 IEDTSIPFQHDILGNKEDEGVESSPKVIRQLPDSNF 70
>03_05_0306 - 22956474-22956980
Length = 168
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +1
Query: 10 GLQEFGR--GQPASPLRRTHRASSV 78
G+ E GR G P +P+RR HR V
Sbjct: 139 GMSEAGRFLGIPPAPMRRRHRGKYV 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,584,106
Number of Sequences: 37544
Number of extensions: 128237
Number of successful extensions: 402
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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