Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O18
         (219 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AL032654-7|CAA21719.1|  219|Caenorhabditis elegans Hypothetical ...    27   2.4  
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AY494975-1|AAR87492.1|  486|Caenorhabditis elegans collagen/olfa...    25   5.5  
AL034393-10|CAA22323.1|  228|Caenorhabditis elegans Hypothetical...    25   5.5  
AF000262-4|AAN60526.2|  486|Caenorhabditis elegans Colmedin (col...    25   5.5  
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr...    25   7.3  
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr...    25   7.3  
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr...    25   7.3  
AB023496-1|BAA97564.1|  793|Caenorhabditis elegans kinesin like ...    25   7.3  
Z74045-4|CAA98554.2|  924|Caenorhabditis elegans Hypothetical pr...    25   9.6  
Z74032-11|CAA98469.2|  924|Caenorhabditis elegans Hypothetical p...    25   9.6  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    25   9.6  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    25   9.6  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    25   9.6  

>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 5   SPGCRNSDEGSPRRPCGEPTGPRP*NG 85
           +P  +  D G P  P G+PT  +P  G
Sbjct: 55  NPNSQAGDSGKPNPPAGDPTKLKPGGG 81


>AL032654-7|CAA21719.1|  219|Caenorhabditis elegans Hypothetical
           protein Y52B11A.5 protein.
          Length = 219

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 80  FTDEARWVRRRGDAGCPRPNSCSP 9
           + D A W+  R    CPR   CSP
Sbjct: 109 YGDAAIWLGARRKGSCPRAGICSP 132


>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical protein
            F46F11.9b protein.
          Length = 1282

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 26   DEGSPRRPCGEPTGPRP*NGPIILCPK*INKSVILWKEYVDGE 154
            D  S   P G    P+  N  I++  +  N ++  W+  +DGE
Sbjct: 929  DVRSSDEPTGSTVAPKQSNTVILIAYRSSNGTMRQWRRVIDGE 971


>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical protein
            F46F11.9a protein.
          Length = 1280

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 26   DEGSPRRPCGEPTGPRP*NGPIILCPK*INKSVILWKEYVDGE 154
            D  S   P G    P+  N  I++  +  N ++  W+  +DGE
Sbjct: 927  DVRSSDEPTGSTVAPKQSNTVILIAYRSSNGTMRQWRRVIDGE 969


>AY494975-1|AAR87492.1|  486|Caenorhabditis elegans
           collagen/olfactomedin domain containingprotein 2
           protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 90  IGPFHGRGPVGSPQGRRGL 34
           +GP    GP G PQGRRGL
Sbjct: 100 VGPPGKSGPAG-PQGRRGL 117


>AL034393-10|CAA22323.1|  228|Caenorhabditis elegans Hypothetical
           protein Y18D10A.12 protein.
          Length = 228

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 62  WVRRRGDAGCPRPNSCSP 9
           WV  R  A CP  N+C+P
Sbjct: 136 WVGGRRKAQCPNRNACAP 153


>AF000262-4|AAN60526.2|  486|Caenorhabditis elegans Colmedin
           (collagen plus olfactomedin)family protein 2 protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 90  IGPFHGRGPVGSPQGRRGL 34
           +GP    GP G PQGRRGL
Sbjct: 100 VGPPGKSGPAG-PQGRRGL 117


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 5   SPGCRNSDEGSPRRPCGEPTGPRP*NGP 88
           SPG R+     P  P G P  P P   P
Sbjct: 162 SPGTRSISSPGPAGPAGPPGPPGPDGAP 189


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 5   SPGCRNSDEGSPRRPCGEPTGPRP*NGP 88
           SPG R+     P  P G P  P P   P
Sbjct: 162 SPGTRSISSPGPAGPAGPPGPPGPDGAP 189


>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform c protein.
          Length = 1576

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 35   CPRPNSCSPG 6
            CP PNSC PG
Sbjct: 1195 CPTPNSCIPG 1204


>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform b protein.
          Length = 1610

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 35   CPRPNSCSPG 6
            CP PNSC PG
Sbjct: 1195 CPTPNSCIPG 1204


>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform a protein.
          Length = 1595

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 35   CPRPNSCSPG 6
            CP PNSC PG
Sbjct: 1195 CPTPNSCIPG 1204


>AB023496-1|BAA97564.1|  793|Caenorhabditis elegans kinesin like
           protein KLP-4 protein.
          Length = 793

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 35  CPRPNSCSPG 6
           CP PNSC PG
Sbjct: 615 CPTPNSCIPG 624


>Z74045-4|CAA98554.2|  924|Caenorhabditis elegans Hypothetical
           protein T27F2.2 protein.
          Length = 924

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 23  SDEGSPRRPCGEPTGP 70
           S +GSPRR C +P  P
Sbjct: 726 SSDGSPRRGCEDPNCP 741


>Z74032-11|CAA98469.2|  924|Caenorhabditis elegans Hypothetical
           protein T27F2.2 protein.
          Length = 924

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 23  SDEGSPRRPCGEPTGP 70
           S +GSPRR C +P  P
Sbjct: 726 SSDGSPRRGCEDPNCP 741


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
           protein K04H4.1b protein.
          Length = 1502

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 102 GHN-IIGPFHGRGPVGSPQGRRGLPSSEFLQPG 7
           GH+ + GP   RGPVG+P G  G P  + + PG
Sbjct: 388 GHDGLPGPVGPRGPVGAP-GAPGQPGIDGM-PG 418


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
           protein K04H4.1a protein.
          Length = 1759

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 102 GHN-IIGPFHGRGPVGSPQGRRGLPSSEFLQPG 7
           GH+ + GP   RGPVG+P G  G P  + + PG
Sbjct: 388 GHDGLPGPVGPRGPVGAP-GAPGQPGIDGM-PG 418


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
           collagen protein.
          Length = 1758

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 102 GHN-IIGPFHGRGPVGSPQGRRGLPSSEFLQPG 7
           GH+ + GP   RGPVG+P G  G P  + + PG
Sbjct: 387 GHDGLPGPVGPRGPVGAP-GAPGQPGIDGM-PG 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,516,162
Number of Sequences: 27780
Number of extensions: 110739
Number of successful extensions: 251
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)