Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O18
         (219 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   3.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   4.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   5.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    19   5.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       19   9.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   9.2  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 3.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 153 SPSTYSFHKITDLFIYLGHNIIG 85
           +P+T     +  +FI +G  IIG
Sbjct: 814 APNTLGLKNMAGVFIVVGVGIIG 836


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 4.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 173 YLHSLSRYFVCAI 211
           YLH+ + YFV ++
Sbjct: 75  YLHTATNYFVTSL 87


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 175 IKVNSLKFTIDIFLPQNYR 119
           I  NS+ +  DIF  Q ++
Sbjct: 75  IDENSMTYAADIFFAQTWK 93


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 105 LGHNIIGPFHG 73
           LGH + G F+G
Sbjct: 121 LGHEVCGRFYG 131


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 2  WSPGCRNSDEGS 37
          WS G +NS+ G+
Sbjct: 43 WSVGKKNSNSGT 54


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -3

Query: 94   YNRAISRTRPGGFAAGATRAALVRIPA 14
            Y     R +PG  +  A  A+   +PA
Sbjct: 1030 YGLRFLRAKPGKSSGAAAMASAAPMPA 1056


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,352
Number of Sequences: 438
Number of extensions: 1240
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3281070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)