Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_O17
(261 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 0.72
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 2.2
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 2.2
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 24 2.9
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 24 2.9
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 24 2.9
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 24 2.9
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 24 3.8
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 24 3.8
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 24 3.8
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 23 5.1
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 23 6.7
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 23 6.7
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo... 23 8.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 23 8.8
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.2 bits (55), Expect = 0.72
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 159 EHRDTLVVHVATTDDIPNSNKSNINFQTN 73
+HRD L + NSN +N++FQT+
Sbjct: 780 KHRDGLSKIFIRPESADNSNNTNVSFQTD 808
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 2.2
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 162 LEHRDTLVVHVATTDD-IPNSNKSNINFQ 79
LEH+ L+V+ TT+D P + K + NF+
Sbjct: 2051 LEHKGVLIVNEKTTEDGHPKTIKPHPNFR 2079
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 24.6 bits (51), Expect = 2.2
Identities = 13/51 (25%), Positives = 20/51 (39%)
Frame = -1
Query: 168 HALEHRDTLVVHVATTDDIPNSNKSNINFQTNIKRQKKQRIQ*NNSSMQWP 16
H++E D P +KSN N + K + IQ + +WP
Sbjct: 733 HSIEEEDDSEFKDVAPGSYPEPSKSNENTKLTAKENDRLLIQGDLLVCEWP 783
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 24.2 bits (50), Expect = 2.9
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 227 QYLNLDVGLTFSNYESSIY-NMRWNTAIH 144
QY NLD+ FS+Y S+I +++ + +H
Sbjct: 434 QYNNLDINSFFSHYMSNIAGKVKFRSLLH 462
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 24.2 bits (50), Expect = 2.9
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -2
Query: 257 TFIISVTAIPQYLNLDVGLTFSNYESSIYNMRWNT 153
+FI+S + YLN + +N E RW +
Sbjct: 219 SFIVSFMILKGYLNSEKAAALTNLELQYQTNRWGS 253
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 24.2 bits (50), Expect = 2.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 2 GTRVIGHCMDELFYWILCFFCRFIFV*KLMLDLFE 106
G + + E YW++ +F+ K M DLFE
Sbjct: 87 GDEEVEEKLKEFVYWLISLDNITVFIQKSMEDLFE 121
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 24.2 bits (50), Expect = 2.9
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = -1
Query: 120 DDIPNSNKSNINFQTNIKRQKKQRIQ*NNSSMQW 19
D + NKS+++ +T +K +RI+ + + +W
Sbjct: 295 DSMLGENKSSVSTETALKPVTNKRIREGDGNYEW 328
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 23.8 bits (49), Expect = 3.8
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +2
Query: 14 IGHCMDELFYWILCFFCRFIFV 79
IG+ +D + ++CFF F+ +
Sbjct: 1153 IGYMLDGFYQSVICFFFSFLVI 1174
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 23.8 bits (49), Expect = 3.8
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +1
Query: 118 VRCCYMNHKCIAVFQRMLYIELS*LENVSP 207
+ C Y HKC + ++ +++L+ V P
Sbjct: 548 ILCDYCKHKCSNIMEQDWFVQLARARGVIP 577
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 23.8 bits (49), Expect = 3.8
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -3
Query: 202 SRSPTMKVLYITCAGTPRYTCGSCSNNGRY 113
S S K L + C G R G C+ +G +
Sbjct: 213 SYSAKSKSLQVACTGDSRAVLGECTPDGSW 242
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 23.4 bits (48), Expect = 5.1
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = -1
Query: 162 LEHRDTLVVHVATTDDIPNSNKSNINFQTNIKRQKKQRIQ*NNSSMQWPMT 10
+ H +TL+V D P+S K+ +N T+ + + + + +S++ P T
Sbjct: 1 MPHSNTLIVPSTNPFDDPSSIKNGLNNLTSSELVNQMKKESLAASVKTPST 51
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 54 VFFVVLYLSEN*C*ICLNLVYRPLLL 131
+F ++ L + C IC N+ Y+P+ L
Sbjct: 348 LFSIIPQLRDFECAICSNVAYKPVRL 373
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 138 VHVATTDDIPNSNKSNINFQTNIKRQKKQ 52
++V +I S KSN+NF + +KK+
Sbjct: 1 MNVGKKSEIQVSAKSNLNFLNELIEEKKR 29
>SPMIT.08 |||mitochondrial ribosomal small
subunit|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 227
Score = 22.6 bits (46), Expect = 8.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 257 TFIISVTAIPQYLNLDVGLTFSNYESSIYNMRWNTAIHLW 138
+FI+++ A+P L FS Y + I A LW
Sbjct: 95 SFIVNIRALPISTPYGSSLIFSKYIAIIIGSNPKIASTLW 134
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 30 MSYFTGFFVFFVV 68
+SYF FFV FVV
Sbjct: 998 LSYFEKFFVLFVV 1010
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,115,558
Number of Sequences: 5004
Number of extensions: 20278
Number of successful extensions: 54
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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