Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O17
         (261 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0074 - 16233681-16233981,16234258-16234670,16235240-16235440     26   4.8  
02_03_0362 + 18158975-18159337                                         25   6.3  
02_02_0219 + 7985152-7985575,7985818-7985894,7986067-7986127,798...    25   8.4  

>06_03_0074 - 16233681-16233981,16234258-16234670,16235240-16235440
          Length = 304

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 157 TPRYTCGSCSNNGRYTKFKQ 98
           T   +CGS S +G YT FKQ
Sbjct: 146 TGALSCGSGSGSGSYTLFKQ 165


>02_03_0362 + 18158975-18159337
          Length = 120

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 169 TCAGTPRYTCGSCSNNG 119
           TCAG+ R  C SC  +G
Sbjct: 71  TCAGSGRMPCRSCGGSG 87


>02_02_0219 +
           7985152-7985575,7985818-7985894,7986067-7986127,
           7986276-7986519,7986613-7987006,7987292-7987729
          Length = 545

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 162 LEHRDTLVVHVATTDDIPNSNKSNINFQTNIKRQKKQRIQ*NNSS 28
           L+HR +  +    T D  NS+  N  +  +   Q+K+ +  ++SS
Sbjct: 247 LQHRQSPAIATMQTLDFKNSSFRNQEWSFSFNHQRKETMNPSSSS 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,705,533
Number of Sequences: 37544
Number of extensions: 112466
Number of successful extensions: 229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)