Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O17
         (261 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC085609-1|AAH85609.1|  458|Homo sapiens CDCA2 protein protein.        28   6.2  
BC063651-1|AAH63651.1|  440|Homo sapiens CDCA2 protein protein.        28   6.2  
BC036214-1|AAH36214.1|  863|Homo sapiens CDCA2 protein protein.        28   6.2  
AK098670-1|BAC05374.1|  422|Homo sapiens protein ( Homo sapiens ...    28   6.2  

>BC085609-1|AAH85609.1|  458|Homo sapiens CDCA2 protein protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 129 ATTDDIPNSNKSNINFQTNIKRQKKQ 52
           AT+D+ PN+N  NIN   NI + K +
Sbjct: 107 ATSDEDPNTNIMNINENKNIPKAKNK 132


>BC063651-1|AAH63651.1|  440|Homo sapiens CDCA2 protein protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 129 ATTDDIPNSNKSNINFQTNIKRQKKQ 52
           AT+D+ PN+N  NIN   NI + K +
Sbjct: 89  ATSDEDPNTNIMNINENKNIPKAKNK 114


>BC036214-1|AAH36214.1|  863|Homo sapiens CDCA2 protein protein.
          Length = 863

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 129 ATTDDIPNSNKSNINFQTNIKRQKKQ 52
           AT+D+ PN+N  NIN   NI + K +
Sbjct: 512 ATSDEDPNTNIMNINENKNIPKAKNK 537


>AK098670-1|BAC05374.1|  422|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25804 fis, clone TST07178. ).
          Length = 422

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 129 ATTDDIPNSNKSNINFQTNIKRQKKQ 52
           AT+D+ PN+N  NIN   NI + K +
Sbjct: 71  ATSDEDPNTNIMNINENKNIPKAKNK 96


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,613,308
Number of Sequences: 237096
Number of extensions: 673132
Number of successful extensions: 1214
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 76,859,062
effective HSP length: 64
effective length of database: 61,684,918
effective search space used: 1357068196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)