Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_O17
(261 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 24 0.35
AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier... 23 0.47
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 0.62
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 22 1.1
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 1.4
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 1.4
AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase prot... 22 1.4
AF388659-3|AAK71993.1| 548|Apis mellifera 1D-myo-inositol-trisp... 21 1.9
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 21 2.5
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 21 2.5
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 2.5
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 2.5
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 2.5
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 23.8 bits (49), Expect = 0.35
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 35 LFYWILCFFC 64
L WILC+FC
Sbjct: 181 LLVWILCYFC 190
>AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier
protein JHBP-1 protein.
Length = 253
Score = 23.4 bits (48), Expect = 0.47
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 245 SVTAIPQYLNLDV-GLTFSNYESSIYNMRWNTAI 147
SVT +Y N+ + GLT N E YN+ W+ I
Sbjct: 83 SVTLRQEYKNIKLYGLT-KNLEIKNYNIDWDKCI 115
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 23.0 bits (47), Expect = 0.62
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 177 YI*HALEHRDTLVVHVATTDDIPNSNKSNINFQTNIKRQKKQ 52
Y HA+ ++D + HV T IP K FQ KR K++
Sbjct: 380 YTCHAVRNQDVVQTHVLTIHTIPEV-KVTPRFQA--KRLKEE 418
Score = 20.2 bits (40), Expect = 4.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 61 LSFYICLKINVRF 99
LS Y C+ INV+F
Sbjct: 691 LSSYNCVPINVQF 703
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 22.2 bits (45), Expect = 1.1
Identities = 6/20 (30%), Positives = 13/20 (65%)
Frame = +3
Query: 12 SSAIAWMSYFTGFFVFFVVL 71
++ I W+S+F F + ++L
Sbjct: 405 AAIIEWLSFFIVIFTYIIIL 424
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 1.4
Identities = 5/7 (71%), Positives = 7/7 (100%)
Frame = +2
Query: 44 WILCFFC 64
WI+C+FC
Sbjct: 217 WIMCYFC 223
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.8 bits (44), Expect = 1.4
Identities = 5/7 (71%), Positives = 7/7 (100%)
Frame = +2
Query: 44 WILCFFC 64
WI+C+FC
Sbjct: 270 WIMCYFC 276
>AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase
protein.
Length = 693
Score = 21.8 bits (44), Expect = 1.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 159 EHRDTLVVHVATTDDIPNSNKSNINFQTNIKR 64
EH++TL + D P ++I TN +R
Sbjct: 414 EHKNTLPQYTVQQLDFPGIEIADIKLTTNQQR 445
>AF388659-3|AAK71993.1| 548|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform C
protein.
Length = 548
Score = 21.4 bits (43), Expect = 1.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 56 NKESSKITHPCN 21
NKE SK H CN
Sbjct: 58 NKEKSKNNHHCN 69
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.0 bits (42), Expect = 2.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 90 C*ICLNLVYRPLLLH 134
C +C NL+Y + LH
Sbjct: 415 CFVCFNLMYWIIYLH 429
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.0 bits (42), Expect = 2.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 90 C*ICLNLVYRPLLLH 134
C +C NL+Y + LH
Sbjct: 415 CFVCFNLMYWIIYLH 429
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.0 bits (42), Expect = 2.5
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 2 GTRVIGHCMDELFYWILC 55
G VI C FYW LC
Sbjct: 77 GHWVIHPCSSFRFYWDLC 94
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.0 bits (42), Expect = 2.5
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 2 GTRVIGHCMDELFYWILC 55
G VI C FYW LC
Sbjct: 77 GHWVIHPCSSFRFYWDLC 94
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.0 bits (42), Expect = 2.5
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 2 GTRVIGHCMDELFYWILC 55
G VI C FYW LC
Sbjct: 77 GHWVIHPCSSFRFYWDLC 94
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,493
Number of Sequences: 438
Number of extensions: 1658
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used: 4762122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
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