Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O16
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290...    27   7.3  
05_07_0320 + 29235266-29235305,29235409-29236682                       26   9.7  

>03_01_0373 -
           2904914-2904949,2905030-2905144,2906446-2906534,
           2906670-2906889,2907921-2907985,2908619-2908879,
           2909204-2909417,2910643-2910698,2910891-2910947,
           2911043-2911115,2912711-2913225
          Length = 566

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 218 DT*LSLCYNYIIVSDQAGDQDQSLTTG 298
           DT L+ C     V+DQAG Q   +TTG
Sbjct: 356 DTMLNCCNQVSAVTDQAGVQVSGVTTG 382


>05_07_0320 + 29235266-29235305,29235409-29236682
          Length = 437

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 5   RVCLPSWTTSSFNSRQDCGQ 64
           R C+PSW   + N+   CGQ
Sbjct: 74  RFCIPSWVAFTANATTLCGQ 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,508,192
Number of Sequences: 37544
Number of extensions: 191394
Number of successful extensions: 315
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)