Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O16
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c...    29   1.7  

>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical
           protein C48B4.4c protein.
          Length = 1704

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 121 LRVTSLNVAQLYKAHYVTKYI--ILVFLCTHIYVRYVIEFV 237
           L    L+    Y AH V  ++   ++FLC+ I + +V+EFV
Sbjct: 291 LTAMGLSTFMFYAAHVVMAFLKFFVIFLCSIIPLTFVMEFV 331


>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical
           protein C48B4.4b protein.
          Length = 1691

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 121 LRVTSLNVAQLYKAHYVTKYI--ILVFLCTHIYVRYVIEFV 237
           L    L+    Y AH V  ++   ++FLC+ I + +V+EFV
Sbjct: 291 LTAMGLSTFMFYAAHVVMAFLKFFVIFLCSIIPLTFVMEFV 331


>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical
           protein C48B4.4a protein.
          Length = 1689

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 121 LRVTSLNVAQLYKAHYVTKYI--ILVFLCTHIYVRYVIEFV 237
           L    L+    Y AH V  ++   ++FLC+ I + +V+EFV
Sbjct: 291 LTAMGLSTFMFYAAHVVMAFLKFFVIFLCSIIPLTFVMEFV 331


>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
           cassette transporter protein.
          Length = 1704

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 121 LRVTSLNVAQLYKAHYVTKYI--ILVFLCTHIYVRYVIEFV 237
           L    L+    Y AH V  ++   ++FLC+ I + +V+EFV
Sbjct: 291 LTAMGLSTFMFYAAHVVMAFLKFFVIFLCSIIPLTFVMEFV 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,255,243
Number of Sequences: 27780
Number of extensions: 179813
Number of successful extensions: 283
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)