Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_O15
(440 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 213 5e-56
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 33 0.12
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.12
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.12
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.12
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 33 0.12
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 33 0.12
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 30 0.65
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 30 0.65
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 30 0.65
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 3.5
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 27 4.6
U20861-9|AAN84854.1| 192|Caenorhabditis elegans Hypothetical pr... 27 4.6
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 27 4.6
AC006795-3|AAF59494.1| 369|Caenorhabditis elegans Hypothetical ... 27 4.6
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 213 bits (520), Expect = 5e-56
Identities = 97/136 (71%), Positives = 112/136 (82%)
Frame = +3
Query: 33 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 212
MGISRD WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RGGN KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 213 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 392
D+GNF+W SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LP
Sbjct: 61 DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120
Query: 393 LGRKKGAKLTEAEEAI 440
L RKK AKL+E + AI
Sbjct: 121 LARKKNAKLSEEDNAI 136
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 201 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 305
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 201 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 305
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 201 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 305
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 201 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 305
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 201 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 305
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 201 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 305
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.65
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 154 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 29
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.65
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 154 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 29
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 30.3 bits (65), Expect = 0.65
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 154 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 29
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 333
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 243 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 365
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 404 LPSEWQQVVAFIPLPERRGIHHDNSI 327
LP E + + IPLP+RRG D++I
Sbjct: 1345 LPDEEDEEMEVIPLPKRRGAAPDSTI 1370
>U20861-9|AAN84854.1| 192|Caenorhabditis elegans Hypothetical
protein C28H8.9b protein.
Length = 192
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +3
Query: 24 PAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTK 143
P + G D W R+ G P++K A NTK
Sbjct: 149 PDEFGSDEDDWSSRKRRKGNLGPVQKATSSRKKNAARNTK 188
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 404 LPSEWQQVVAFIPLPERRGIHHDNSI 327
LP E + + IPLP+RRG D++I
Sbjct: 1345 LPDEEDEEMEVIPLPKRRGAAPDSTI 1370
>AC006795-3|AAF59494.1| 369|Caenorhabditis elegans Hypothetical
protein Y50D4B.5 protein.
Length = 369
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -3
Query: 39 YPSWLGQKRKASC 1
Y +WLG KRKASC
Sbjct: 268 YTAWLGGKRKASC 280
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,186,357
Number of Sequences: 27780
Number of extensions: 244218
Number of successful extensions: 618
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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