Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O14
         (226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos...    27   0.33 
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    24   2.4  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    24   3.1  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    23   4.1  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    23   4.1  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    23   5.4  
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    23   5.4  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    23   5.4  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    23   7.2  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    22   9.5  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    22   9.5  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    22   9.5  
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    22   9.5  

>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
           Caf16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 101 SIFSYDRCLRIHIVMSGECARVGISMSFLGPF 196
           SI   D   R+H V  GE  RV + M  L PF
Sbjct: 116 SILDIDLRWRMHAVSDGERRRVQLCMGLLRPF 147


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 105 IDWRSETITKLFFN 64
           +DWRSE I   FFN
Sbjct: 314 LDWRSEGIRSWFFN 327


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 187 KEAHRNAYSCALATHNNVDPKTPVVAEDRLAVRDN 83
           ++   +AY  +  T   ++PK+P++AE +  V +N
Sbjct: 595 RDTSMSAYMSSRKTFE-INPKSPIIAELKKKVEEN 628


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 216 CHLDIFEKGPR 184
           C +D++EKGPR
Sbjct: 26  CTIDLYEKGPR 36


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +1

Query: 22  IWFSTYCDFSHCLQVKEQLRDCL*PPVDLQLRQVSS--DPHCYEWRVRK 162
           +W   Y  +   LQ+   LR      VDL L  V S  D   Y+ +V K
Sbjct: 200 VWGPEYNGYPTALQIHNWLRSTNITKVDLSLANVISLVDVLIYDGKVEK 248


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 199 RKRSKEAHRNAYSCALATHNNVDPKT 122
           RKR+ E+    Y  A A   N D KT
Sbjct: 458 RKRTSESRHLHYLMAKAKRENADSKT 483


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 184 EAHRNAYSCALATHNNVDPKTPVVAEDRLAVRDNHEVVL 68
           +  R +Y+C   T NNV    P     +L +++ H  +L
Sbjct: 254 QLERTSYTCQGLTRNNVSISFP----SKLILKNKHHYIL 288


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/48 (25%), Positives = 18/48 (37%)
 Frame = -1

Query: 199 RKRSKEAHRNAYSCALATHNNVDPKTPVVAEDRLAVRDNHEVVL*PED 56
           RK  +EA           H N+ P+ P V        D+  +   P+D
Sbjct: 143 RKLDEEAELEEKEAEEELHTNIHPEAPTVLPPIDGFTDSQPISTLPQD 190


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 210 LDIFEKGPRKLIEMPTL 160
           LD+F   P  L +MPTL
Sbjct: 200 LDVFSCSPENLKKMPTL 216


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 110 SYDRCLRIHIVMSGEC 157
           SYD  +RI  V +GEC
Sbjct: 524 SYDSSIRIWRVSTGEC 539


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 184 EAHRNAYSCALATHNNVDPKTPVVAE 107
           E    AYS  L  +  + PKT ++ E
Sbjct: 268 ERSEQAYSLRLHWYGKLTPKTDIIVE 293


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 110 SYDRCLRIHIVMSGECAR 163
           SYD   RI  V+SG+C +
Sbjct: 199 SYDGMARIWDVLSGQCLK 216


>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 198 EKGPRKLIEMPTLAHSPLITMWIRRHLS 115
           EK P K I +  L   P +T   + HL+
Sbjct: 313 EKNPEKRITIEELLRDPFLTERGKHHLT 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 919,211
Number of Sequences: 5004
Number of extensions: 15199
Number of successful extensions: 48
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)