Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_O14
(226 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0591 + 19792694-19792738,19794190-19794509,19795104-197951... 30 0.22
03_02_0803 + 11365959-11366390,11366470-11366502,11367158-113672... 28 0.88
02_04_0365 - 22384981-22385930,22386298-22386364,22386486-22386545 27 2.7
04_01_0368 + 4839043-4839483 26 3.6
06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774... 25 6.2
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 25 6.2
11_03_0184 + 11317787-11318198,11318337-11318671,11318756-113190... 25 8.2
11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910 25 8.2
03_02_0895 + 12230683-12230844,12230937-12230991,12231106-122311... 25 8.2
>07_03_0591 +
19792694-19792738,19794190-19794509,19795104-19795161,
19798000-19798056,19798373-19798440,19798454-19798543,
19798619-19798820,19798902-19798988,19799642-19799719,
19799815-19800040,19800260-19800483,19801988-19802014,
19802470-19802518,19802594-19802688,19802778-19802864,
19802973-19803100,19803198-19803294,19803563-19803788,
19803888-19804294
Length = 856
Score = 30.3 bits (65), Expect = 0.22
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 23 FGFLRIAISLIVFRLKNNFVIVSDRQSIFSYDRCLRIHIVMSGECARV 166
FG L + S I+F +KN F++V+ S+ Y++ R V + C V
Sbjct: 803 FGLLMVITSFIIFHVKNEFLLVTALCSMSFYNQA-RFDAVSNQTCGFV 849
>03_02_0803 +
11365959-11366390,11366470-11366502,11367158-11367214,
11367784-11367945,11367987-11368139,11368218-11368295,
11368377-11368469,11368981-11369071,11369091-11369209
Length = 405
Score = 28.3 bits (60), Expect = 0.88
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 74 NFVIVSDRQSIFSYDRCLRIHIVMSGECARVGISMSFLGPF 196
N +V R I D R+H G+ RV I M L PF
Sbjct: 165 NVTVVLQRIHILDIDLAWRMHKASDGQRRRVQICMGLLKPF 205
>02_04_0365 - 22384981-22385930,22386298-22386364,22386486-22386545
Length = 358
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -3
Query: 218 YVTLIFSKKVQGSSSKCLLLRTRHS*QCGSEDTCRS*RSTGGQRQSRSCSL 66
++ L K++ + +C R ++ +T S R G R SRSCS+
Sbjct: 304 HLCLFCHKRILEADGRCPACRKQYISASSGGETVGSEREMGNLRLSRSCSM 354
>04_01_0368 + 4839043-4839483
Length = 146
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 135 WIRRHLS*LKIDWRSETITKLFFNLKTMREIAIRRKPNSSYKAS 4
WI R L + I+ RSET+ L F + +I P+SS+++S
Sbjct: 56 WIHRLLDEMDIEIRSETLIFLVFLPFPVHQIG--TAPSSSFRSS 97
>06_01_0996 +
7746358-7746493,7747102-7747262,7747586-7747647,
7748142-7748595,7748994-7749134,7749444-7749633,
7749842-7750530,7750605-7750804,7751210-7751375,
7751850-7752046,7752162-7752396
Length = 876
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 97 PVDLQLRQVSSDPHCYEWRVRKSRHFDELPWTFFENIK 210
P+ ++ + + PH Y RV K F P+ +EN K
Sbjct: 613 PIACEVEEETPVPHEYNKRVVKPAKFKRSPFIDYENKK 650
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 97 PVDLQLRQVSSDPHCYEWRVRKSRHFDELPWTFFENIK 210
P+ ++ + + PH Y RV K F P+ +EN K
Sbjct: 475 PIACEVEEETPVPHEYNKRVVKPAKFKRSPFIDYENKK 512
>11_03_0184 +
11317787-11318198,11318337-11318671,11318756-11319048,
11319125-11319483,11319549-11319748,11319823-11320012,
11320084-11320188,11320262-11320338,11320428-11320649
Length = 730
Score = 25.0 bits (52), Expect = 8.2
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 217 MSP*YFRKRSKEAHRNAYSCALATHNNVDPKTPVVAEDRLAVRDNHEVVL 68
++P + K KEA S ALA ++ P+ V A D A + EV L
Sbjct: 660 VAPDTYFKNIKEARSMGASLALAMTKSLYPRVDVDAIDGFADGTSEEVAL 709
>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
Length = 1155
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 43 DFSHCLQVKEQLRDCL*PPVDLQLRQVSSDPHCY 144
D SHCLQVK + + L +LQ+ +S HCY
Sbjct: 573 DLSHCLQVK-GIPEALGGLTNLQVLNLS---HCY 602
>03_02_0895 +
12230683-12230844,12230937-12230991,12231106-12231169,
12231292-12231334,12231509-12231607,12231710-12231778,
12231912-12232245,12232317-12232471,12232592-12233287
Length = 558
Score = 25.0 bits (52), Expect = 8.2
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = -1
Query: 184 EAHRNAYSCALATHNNVDPKTPVVAE-----DRLAVRDNHEVVL*PED 56
EA + CA NN+ K+ V D L +RD HE+ P+D
Sbjct: 59 EASSSQALCATTDINNLSSKSSAVQIIEYILDTLEMRDTHELFAMPDD 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,720,065
Number of Sequences: 37544
Number of extensions: 94447
Number of successful extensions: 238
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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