Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_O14
(226 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical p... 27 1.4
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 27 1.8
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 27 1.8
Z49126-1|CAA88938.2| 605|Caenorhabditis elegans Hypothetical pr... 26 3.1
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ... 26 3.1
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 26 4.1
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 26 4.1
Z66513-14|CAN86619.1| 418|Caenorhabditis elegans Hypothetical p... 25 5.5
Z66513-13|CAN86618.1| 426|Caenorhabditis elegans Hypothetical p... 25 5.5
AF299333-1|AAK62992.1| 371|Caenorhabditis elegans phytochelatin... 25 5.5
AF299332-1|AAK62991.1| 371|Caenorhabditis elegans phytochelatin... 25 5.5
AL110477-7|CAB54332.1| 158|Caenorhabditis elegans Hypothetical ... 25 9.6
AL032631-9|CAA21575.2| 893|Caenorhabditis elegans Hypothetical ... 25 9.6
AF024490-1|AAB70308.1| 334|Caenorhabditis elegans Hypothetical ... 25 9.6
>U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical
protein T03F1.1 protein.
Length = 419
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 37 YCDFSHCLQ-VKEQLRDCL*PPVDLQL 114
YCD SHCLQ KE PVDL++
Sbjct: 312 YCDDSHCLQRQKEYEEKVANQPVDLEV 338
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 41 AISLIVFRLKNNFVIVSDRQSIFSYDRCLRIHIVMSGE 154
+ SL V +L NN + + +Q S CLR I + GE
Sbjct: 531 SFSLEVLKLNNNGLGIGGKQIAKSLTECLRKSIAVGGE 568
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 41 AISLIVFRLKNNFVIVSDRQSIFSYDRCLRIHIVMSGE 154
+ SL V +L NN + + +Q S CLR I + GE
Sbjct: 568 SFSLEVLKLNNNGLGIGGKQIAKSLTECLRKSIAVGGE 605
>Z49126-1|CAA88938.2| 605|Caenorhabditis elegans Hypothetical
protein DH11.1 protein.
Length = 605
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 52 HCLQVKEQLRDCL*PPVDLQLRQVSSDPHCYEW 150
H KEQ ++C+ P +D+ R + +D W
Sbjct: 119 HWKLTKEQFKECIAPSIDIVSRALQTDMVIPNW 151
>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 7 protein.
Length = 1887
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 29 FLRIAISLIVFRLKNNFVIVSDRQSIFSYDRCLRIHI 139
F +A +I+F L NF+ VS+ + + RCL + I
Sbjct: 1626 FRELAEPIIIFDLYENFLNVSEVEDMGERVRCLSVMI 1662
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical
protein F18C12.2b protein.
Length = 2271
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 154 LATHNNVDPKTPVVAEDRLAVRDNHEVVL*PEDNERNRNT*KTKF 20
L + D K PV +D L VR+N + NE +N K KF
Sbjct: 666 LLNYMESDEKVPVNEKDLLIVRNNFDAA----SNETKQNAMKEKF 706
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical
protein F18C12.2a protein.
Length = 2279
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 154 LATHNNVDPKTPVVAEDRLAVRDNHEVVL*PEDNERNRNT*KTKF 20
L + D K PV +D L VR+N + NE +N K KF
Sbjct: 666 LLNYMESDEKVPVNEKDLLIVRNNFDAA----SNETKQNAMKEKF 706
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 154 LATHNNVDPKTPVVAEDRLAVRDNHEVVL*PEDNERNRNT*KTKF 20
L + D K PV +D L VR+N + NE +N K KF
Sbjct: 666 LLNYMESDEKVPVNEKDLLIVRNNFDAA----SNETKQNAMKEKF 706
>Z66513-14|CAN86619.1| 418|Caenorhabditis elegans Hypothetical
protein F54D5.1b protein.
Length = 418
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 225 KSLCHLDIFEKGPRKLIEMPTLAHS-PLITMWIRRHLS*LKIDWRSETIT 79
K+LC +D+ K PR L+E+ + PLI ++ +++ D+ + I+
Sbjct: 201 KALCSVDVTTKLPRGLVELELKKGTRPLIMYGLKAYVNINDSDFATSVIS 250
>Z66513-13|CAN86618.1| 426|Caenorhabditis elegans Hypothetical
protein F54D5.1a protein.
Length = 426
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 225 KSLCHLDIFEKGPRKLIEMPTLAHS-PLITMWIRRHLS*LKIDWRSETIT 79
K+LC +D+ K PR L+E+ + PLI ++ +++ D+ + I+
Sbjct: 209 KALCSVDVTTKLPRGLVELELKKGTRPLIMYGLKAYVNINDSDFATSVIS 258
>AF299333-1|AAK62992.1| 371|Caenorhabditis elegans phytochelatin
synthase protein.
Length = 371
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 225 KSLCHLDIFEKGPRKLIEMPTLAHS-PLITMWIRRHLS*LKIDWRSETIT 79
K+LC +D+ K PR L+E+ + PLI ++ +++ D+ + I+
Sbjct: 201 KALCSVDVTTKLPRGLVELELKKGTRPLIMYGLKAYVNINDSDFATSVIS 250
>AF299332-1|AAK62991.1| 371|Caenorhabditis elegans phytochelatin
synthase protein.
Length = 371
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 225 KSLCHLDIFEKGPRKLIEMPTLAHS-PLITMWIRRHLS*LKIDWRSETIT 79
K+LC +D+ K PR L+E+ + PLI ++ +++ D+ + I+
Sbjct: 201 KALCSVDVTTKLPRGLVELELKKGTRPLIMYGLKAYVNINDSDFATSVIS 250
>AL110477-7|CAB54332.1| 158|Caenorhabditis elegans Hypothetical
protein Y113G7B.11 protein.
Length = 158
Score = 24.6 bits (51), Expect = 9.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 173 KCLLLRTRHS*QCGSEDTCRS*RSTGGQRQSRSC 72
KCL ++++ QC S+ C S S G Q RSC
Sbjct: 26 KCLSGHSQYATQCTSQSYCVSITSKNGPVQ-RSC 58
>AL032631-9|CAA21575.2| 893|Caenorhabditis elegans Hypothetical
protein Y106G6H.7 protein.
Length = 893
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 151 ATHNNVDPKTPVVAEDRLAVRDNHEVVL*P 62
++HN VDP+ + +D DN + VL P
Sbjct: 736 SSHNEVDPEVVALGKDLHQFHDNLKDVLSP 765
>AF024490-1|AAB70308.1| 334|Caenorhabditis elegans Hypothetical
protein C02H6.1 protein.
Length = 334
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 32 LRIAISLIVFRLKNNFVIVSDRQSIF 109
L ++SLIVF L NF+I +D + F
Sbjct: 23 LTFSLSLIVFPLYRNFLIPADLYTHF 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,080,208
Number of Sequences: 27780
Number of extensions: 86964
Number of successful extensions: 284
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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