Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O14
         (226 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    19   5.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   7.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   7.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    19   7.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   9.9  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    19   9.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -1

Query: 196 KRSKEAHRNAYSCALATHNNVDPKTPVVAEDRLAVRDNHEVV 71
           KRS E+     S     + N  PK  V A + L     ++VV
Sbjct: 12  KRSAESEFEGASSPKKRNKNPQPKNAVCALNELKSGAVYKVV 53


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 176 MSFLGPFSKISR*HKLL 226
           +SFLGP   +S   K+L
Sbjct: 98  LSFLGPIKSLSLSIKML 114


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 133 PHCYEWRVRKSRHFDEL 183
           PH   + + ++RH D+L
Sbjct: 763 PHVAAYFLSRARHHDDL 779



 Score = 18.6 bits (36), Expect = 9.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 165 TLAHSPLITMWIRRHLS*LKI 103
           T   S +  MW+RR L+ L +
Sbjct: 580 TCLGSSIKAMWLRRALASLMV 600


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = -2

Query: 183 KLIEMPTLAHSPLITMWIRRHLS*LKIDWRSE 88
           +LIEM          +W+ +  +  K+ W  E
Sbjct: 69  QLIEMNLKNQVMTTNVWVEQRWNDYKLKWNPE 100


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 156 HSPLITMWIRRHLS 115
           HS +  MW   HLS
Sbjct: 92  HSWMTLMWTDSHLS 105


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 7/24 (29%), Positives = 10/24 (41%)
 Frame = -2

Query: 192 GPRKLIEMPTLAHSPLITMWIRRH 121
           GP  L +   +     I  W+ RH
Sbjct: 87  GPNGLTKKQEMLVRSAIKYWVERH 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,670
Number of Sequences: 438
Number of extensions: 1170
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3533460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)